View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_149 (Length: 290)
Name: NF8518A_low_149
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_149 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 290
Target Start/End: Complemental strand, 26908889 - 26908614
Alignment:
| Q |
15 |
atgaaagatcagcagccgcagatgacgaagataaaccggagaaaacacgatcacatagacgccgttcactcggaaacagaatcttcagagcaacattcga |
114 |
Q |
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| T |
26908889 |
atgaaagatcggcagccgcagatgacgaagataaaccggagaaaacacgatcacatagacgccgttcactcggaaacagaatcttcagagcaacattcga |
26908790 |
T |
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| Q |
115 |
agccttaatccatcgttcaatttcatcttcaagatcttgccattgcatcttatgaacttccgaaatactcaatttctgtaaccctaatctcgataaactc |
214 |
Q |
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| T |
26908789 |
agccttaatccatcgttcaatttcatcttcaagatcttgccattgcatcttatgaacttccgaaatactcaatttctgtaaccctaatctcgataaactc |
26908690 |
T |
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| Q |
215 |
tcttccaaaaactccctcctacaaccaccgtcaacatgcgaacactccttcccaaaccccgccgctatcatccttt |
290 |
Q |
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| T |
26908689 |
tcttccaaaaactccctcctacaaccaccgtaaacatgcgaacactccttcccaaaccccgctgctatcatccttt |
26908614 |
T |
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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 26899670 - 26899762
Alignment:
| Q |
15 |
atgaaagatcagcagccgcagatgacgaagataaaccggagaaaacacgatcacatagacgccgttcactcggaaacagaatcttcagagcaa |
107 |
Q |
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| T |
26899670 |
atgaaagatcggcagccgcagatgacgaagataaaccggagaaaacacgatcacgtagacgccgttcactcggaaacagaatcttcagagcaa |
26899762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 31275406 - 31275264
Alignment:
| Q |
80 |
tcactcggaaacagaatcttcagagcaacattcgaagccttaatccatcgttcaatttcatcttcaagatcttgccattgcatcttatgaacttccgaaa |
179 |
Q |
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||||||||||| || ||||||| ||||||||| || | |||||||||| ||||||||||||||||| ||||||||| ||||| || ||||| || || |
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| T |
31275406 |
tcactcggaaaaagtatcttcaaagcaacattgaaacctttaatccatctttcaatttcatcttcaatatcttgccactgcattttgtgaacatcttcaa |
31275307 |
T |
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| Q |
180 |
tactcaatttctgtaaccctaatctcgataaactctcttccaa |
222 |
Q |
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| T |
31275306 |
tactcagcttctgtaaccctaatctcgataaactttcctccaa |
31275264 |
T |
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