View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_158 (Length: 285)
Name: NF8518A_low_158
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_158 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 48669392 - 48669640
Alignment:
| Q |
19 |
aagaagatctttggaagaagatttgggaagatgcaacttatgatcttgcatctgttctctcttctcttgctgtctttgttttcactttcactctttactt |
118 |
Q |
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| T |
48669392 |
aagaagatctttggaagaagatttgggaagatgcaacttatgatcttgcatctgttctctcttctcttgctgtctttgttttcactttcactctttactt |
48669491 |
T |
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| Q |
119 |
catgtcaaggccacgtcctatttatctcattggttttgcatgctatcaacctgatgatgaactcaaggtatgcacacaaaaactttataaatatgcaaat |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48669492 |
catgtcaaggccacgtcctatttatctcattgattttgcatgctatcaacctgatgatgaactcaaggtatgcacacaaaaactttataaatatgcaaat |
48669591 |
T |
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| Q |
219 |
gcatctattactatttaattaaattaatcaatcaacgcgtggttgatcc |
267 |
Q |
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| T |
48669592 |
gcatctattactatttaattaaattaatcaatcaacgcgtggttgatcc |
48669640 |
T |
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