View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_16 (Length: 475)
Name: NF8518A_low_16
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 465
Target Start/End: Complemental strand, 6179909 - 6179468
Alignment:
| Q |
7 |
atttaatgagttaaaaacacaagacttatcaaatctcattcagatgtggtacacattatttgaagtatgtgtagaattcggttgagttgccnnnnnnnnc |
106 |
Q |
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| T |
6179909 |
atttaatgagttaaaaacacaagacttatcaaatcacattcagatgtggtacacattatttgatgcatgtgtagaattcggttgagttgc--aaaaaaac |
6179812 |
T |
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| Q |
107 |
catgattttaannnnnnnnaatatttttattaaatataaaactcatcattgaacgatgagttttcaataagacaaaggagactagatcgaaaatgaagaa |
206 |
Q |
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| T |
6179811 |
catgattttaattttttt-aatatttttattaaatataaaactcatcattgaacgatgagttttcaataagacaaaggaga--agatcgaaaatgaaaaa |
6179715 |
T |
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| Q |
207 |
atagagatagatgcaagaaacattttgagagtgtgggtttttgtgtggatgagagaaagagtttgatgctagaaacaacgagagatttgtggctctaatt |
306 |
Q |
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| T |
6179714 |
atagagatagatgcaagaaacattttgagagtgtgg------------atgagagaaagagtttgatgctagaaacaacgagagatttgtggctctaatt |
6179627 |
T |
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| Q |
307 |
ttgtaagagtgagaaagaaagtgtgagtgagaaaatcaacactcacaaaataaagcttagtagtataatgtgttcgtatatataagtggcaagaaaatga |
406 |
Q |
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| T |
6179626 |
ttgtaagagtgagaaagaaagtgtgagtgagaaaatcaacactcacaaaataaagcttagtagtataatgtgttcgtatatataagtggcaagaaaatga |
6179527 |
T |
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| Q |
407 |
gattgagatagaggttctaggnnnnnnnnggtagtatattttagggttatcaatattgt |
465 |
Q |
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| T |
6179526 |
gattgagatagaggttctaggtttattttggtagtagattttagggttacaaatattgt |
6179468 |
T |
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