View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_160 (Length: 283)
Name: NF8518A_low_160
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_160 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 5726343 - 5726603
Alignment:
| Q |
21 |
taaactaattatttagtttggagttccaatttaaacctgtgcatatgaaaaatatatacccgaatatgtcaatatcataaaatgatatcaattaactcaa |
120 |
Q |
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| T |
5726343 |
taaactaattatttagtttggagtttcaatttaaacctgtgcatatgaaaaatatatacccgaatatgtcaatatcataaaatgatatcaattaactcaa |
5726442 |
T |
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| Q |
121 |
aaggaatctctacgag--------------acattatttgtttgctaaggaaaaactaagaagttaagggtgcaaaaattaactctaaattttatgcttc |
206 |
Q |
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| T |
5726443 |
aaggaatctctgcaattgctcgtagatgttacattatttgtt-gctaaggaaaaactaagaagttaaggttgcaaaaattaactctaaattttatgcttc |
5726541 |
T |
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| Q |
207 |
attatgtcggcatatgttaataccttgattaaattaaagaaatgctttttccagtctactat |
268 |
Q |
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| T |
5726542 |
attatgtcggcatatgttaatatcttaattaaattaaagaaatgcttttttcagtctactat |
5726603 |
T |
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