View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_161 (Length: 283)
Name: NF8518A_low_161
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_161 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 40586119 - 40586365
Alignment:
| Q |
19 |
atcaagcacagagaaaaagaaaggttaagataccatttgttggaggtgttgtatatggagctggagc------aggagctggaggtggagttggataagg |
112 |
Q |
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| T |
40586119 |
atcaagcacagagaaaaagaaaggttaagataccatttgttggaggtgttgtatatggagctggagctggagcaggagctggaggtggagttggataagg |
40586218 |
T |
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| Q |
113 |
agcaagtggaactggcattataaat-aactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccattcattttttcaa |
211 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40586219 |
agcaagtggaactggcattataaaagaactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccatccattttttcaa |
40586318 |
T |
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| Q |
212 |
ctcctggaagaggaagaaatatagtaaaagattcattcaagagggag |
258 |
Q |
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| T |
40586319 |
ctcctggaaaaggaagaaatatagtaaaagattcattcaagagggag |
40586365 |
T |
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