View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_163 (Length: 280)
Name: NF8518A_low_163
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_163 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 33140985 - 33141222
Alignment:
| Q |
21 |
atcaataaaggctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaa |
120 |
Q |
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| T |
33140985 |
atcaataaaggctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggga |
33141084 |
T |
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| Q |
121 |
aaattccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggggataaggccaatggtgagca |
220 |
Q |
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| T |
33141085 |
aaattccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggcgataaggttaatgctgaaca |
33141184 |
T |
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| Q |
221 |
ttagctagcttcaccggtctttggcatcggtaaactat |
258 |
Q |
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| T |
33141185 |
ttagctagcttcactggtctttggcatcggcaaactat |
33141222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 33159614 - 33159783
Alignment:
| Q |
30 |
ggctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaattccag |
129 |
Q |
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| T |
33159614 |
ggctttgaatactcatttagagagtatcataacacgattgctagttctgttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccag |
33159713 |
T |
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| Q |
130 |
attttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg |
199 |
Q |
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| T |
33159714 |
actttattaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatgg |
33159783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 33182458 - 33182627
Alignment:
| Q |
30 |
ggctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaattccag |
129 |
Q |
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||||||||| | |||||||||| ||||| ||| | |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
33182458 |
ggctttgaacactcatttagagagtatcataacacgattgctagttctgttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccag |
33182557 |
T |
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| Q |
130 |
attttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg |
199 |
Q |
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| T |
33182558 |
actttattaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatgg |
33182627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 33287100 - 33286936
Alignment:
| Q |
42 |
gcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaattccagattttatcgagt |
141 |
Q |
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||||||| ||||||||| | ||||||||| | || ||||| ||||||||||||||||||||| ||| |||||||||||||| ||||||||| | |||| |
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| T |
33287100 |
gcatttaatgaacatcataagaaggttgctccttcctttcatctttgctctcaccttgagattcataaagttgctggaaaaatcccagattttgttgagt |
33287001 |
T |
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| Q |
142 |
gtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggggataag |
206 |
Q |
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|||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||| ||||||| |
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| T |
33287000 |
gtccagattgtcgtcgcagaatggaagtgtttattacctacaagtgttgccatgatgaggataag |
33286936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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