View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_164 (Length: 280)
Name: NF8518A_low_164
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_164 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 45759017 - 45759240
Alignment:
| Q |
20 |
tattcctccaactacccgatgttttcttcaaaacttcaacaactaatttccacattcggagcctcctcagattggctcccactgacaaatcgaggtaaat |
119 |
Q |
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| T |
45759017 |
tattcctccaactacccgatgttttctccaaaacttcaacaactaatttccacattcggagcctcctcagattggctcccactgacaaatcgaggtaaat |
45759116 |
T |
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| Q |
120 |
aaaggtggttttatccatttttcacttaaggaatcatgttgatgtatcgatgacatttgatgagttaacattaacattggagagcttactcttgaaaaaa |
219 |
Q |
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| T |
45759117 |
aaaggggattttatccatttttcacttaagaaatcaggttgatgtatcgatgaaatttgatgagttaacattaacattggagagcttactcttgaaaaaa |
45759216 |
T |
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| Q |
220 |
ttaacctttagaccaaaaattaat |
243 |
Q |
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| T |
45759217 |
ttaacctttaaaccaaaaattaat |
45759240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 7617860 - 7617900
Alignment:
| Q |
234 |
aaaaattaatggaacacgtaattattaacatcgatcgtttt |
274 |
Q |
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| T |
7617860 |
aaaaattaatggaacaagtaattattaacatcgatcgtttt |
7617900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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