View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_17 (Length: 472)
Name: NF8518A_low_17
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_17 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 10 - 466
Target Start/End: Original strand, 87358 - 87814
Alignment:
| Q |
10 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87358 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
87457 |
T |
|
| Q |
110 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattcagtctttcat |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
87458 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
87557 |
T |
|
| Q |
210 |
tcaatgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagt |
309 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
87558 |
tccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagt |
87657 |
T |
|
| Q |
310 |
tttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
409 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87658 |
tttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
87757 |
T |
|
| Q |
410 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
466 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87758 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
87814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 466
Target Start/End: Original strand, 95388 - 95830
Alignment:
| Q |
10 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
109 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
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| T |
95388 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
95473 |
T |
|
| Q |
110 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattcagtctttcat |
209 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||| |
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| T |
95474 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
95573 |
T |
|
| Q |
210 |
tcaatgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagt |
309 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
95574 |
tccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagt |
95673 |
T |
|
| Q |
310 |
tttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
409 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95674 |
tttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
95773 |
T |
|
| Q |
410 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
466 |
Q |
| |
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||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
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|
| T |
95774 |
gtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggactatt |
95830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 10 - 466
Target Start/End: Complemental strand, 40878925 - 40878469
Alignment:
| Q |
10 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40878925 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
40878826 |
T |
|
| Q |
110 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattcagtctttcat |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40878825 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
40878726 |
T |
|
| Q |
210 |
tcaatgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagt |
309 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||| |
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|
| T |
40878725 |
tccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagt |
40878626 |
T |
|
| Q |
310 |
tttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
409 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878625 |
tttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
40878526 |
T |
|
| Q |
410 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40878525 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
40878469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 466
Target Start/End: Complemental strand, 40870894 - 40870452
Alignment:
| Q |
10 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
109 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
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|
| T |
40870894 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
40870809 |
T |
|
| Q |
110 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattcagtctttcat |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||| |
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|
| T |
40870808 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
40870709 |
T |
|
| Q |
210 |
tcaatgtagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagt |
309 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||| |
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|
| T |
40870708 |
tccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagt |
40870609 |
T |
|
| Q |
310 |
tttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
409 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870608 |
tttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
40870509 |
T |
|
| Q |
410 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
40870508 |
gtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggactatt |
40870452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 455
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
366 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcg |
455 |
Q |
| |
|
||||||||| || || |||||||| |||||||||||||||||||| || || ||| ||||||||| ||||| |||||| |||||||||| |
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| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 461
Target Start/End: Original strand, 28346744 - 28346823
Alignment:
| Q |
382 |
ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttgga |
461 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || |||||| |||||| |||||||| || ||| |||| ||||||||||| |
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| T |
28346744 |
ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 466
Target Start/End: Original strand, 42730140 - 42730239
Alignment:
| Q |
367 |
tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
466 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||| ||||| || |||||| ||||||||| ||||| || || |||||||| | ||||| |||| |
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|
| T |
42730140 |
tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgctgagactatttttcctaggttggattatt |
42730239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
366 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
420 |
Q |
| |
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||||||||| || || ||||| ||||||||||||||||||||||| || |||||| |
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|
| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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