View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_173 (Length: 273)
Name: NF8518A_low_173
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_173 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42553340 - 42553563
Alignment:
| Q |
1 |
ggcttgagaggcccaaaacaataaacttcacttttgaaaggagatgggtaatttctaaagagactccatgtattacttaaaattcaaccaaaacacttaa |
100 |
Q |
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| T |
42553340 |
ggcttgagaggcccaaaacaataaacttcacttttgaatggagatgggtaatttctaaagagactccctgtattacttaaaattcaaccaaaacacttaa |
42553439 |
T |
|
| Q |
101 |
cgaagctaaacgtcaataggaatggtttttagttaaaaaatgattgaatcgatgaagtctacattggttttgtttttagtgttcttctaaagagacttcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42553440 |
cgaagctaaacgtcaataggaatggtttttagttaaaaaatgattgaatcgatgaagtctacattggtttggtttttagtgttcttctaaagagacttcg |
42553539 |
T |
|
| Q |
201 |
tgattatgaagtctaccttgtaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42553540 |
tgattatgaagtctaccttgtaat |
42553563 |
T |
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