View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_175 (Length: 270)

Name: NF8518A_low_175
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_175
NF8518A_low_175
[»] chr6 (26 HSPs)
chr6 (1-264)||(5688749-5689018)
chr6 (1-264)||(5177919-5178177)
chr6 (1-264)||(5279744-5280008)
chr6 (14-124)||(5242504-5242614)
chr6 (13-148)||(5126597-5126732)
chr6 (1-116)||(5398226-5398341)
chr6 (1-118)||(5346209-5346326)
chr6 (15-124)||(5427094-5427203)
chr6 (1-117)||(5180773-5180889)
chr6 (1-124)||(5065441-5065564)
chr6 (18-118)||(5100816-5100916)
chr6 (18-118)||(5135917-5136017)
chr6 (1-118)||(5156011-5156128)
chr6 (19-118)||(23127308-23127407)
chr6 (12-118)||(5098402-5098508)
chr6 (1-118)||(5372277-5372394)
chr6 (12-117)||(5283223-5283328)
chr6 (1-118)||(5351580-5351697)
chr6 (6-121)||(5253718-5253833)
chr6 (1-116)||(5352863-5352978)
chr6 (23-117)||(5439213-5439307)
chr6 (1-118)||(2939095-2939212)
chr6 (13-118)||(5072680-5072785)
chr6 (1-67)||(5334365-5334431)
chr6 (12-117)||(5256113-5256218)
chr6 (6-98)||(5124461-5124553)
[»] chr4 (5 HSPs)
chr4 (17-195)||(25569036-25569217)
chr4 (13-145)||(4122615-4122747)
chr4 (12-148)||(4132586-4132719)
chr4 (12-118)||(4319300-4319406)
chr4 (78-124)||(7884147-7884193)
[»] chr3 (4 HSPs)
chr3 (13-116)||(47985393-47985496)
chr3 (13-116)||(48003967-48004070)
chr3 (13-116)||(47994680-47994783)
chr3 (13-116)||(48013252-48013355)
[»] chr7 (1 HSPs)
chr7 (1-124)||(36212913-36213036)
[»] scaffold0294 (1 HSPs)
scaffold0294 (19-115)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 5689018 - 5688749
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  5689018 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagt 5688919  T
Q  101 ttatctcgtatatgatgagccaatccgtgaaaatatggagcaatgtcaagaacaaggagaaaatgatattgtgtg---tagtggtgatgaagatgaatgc 197  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||    
T  5688918 ttatctcgtatatgatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaatgc 5688819  T
Q  198 tattaagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 264  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  5688818 tattaagagaggtctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaaatga 5688749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 5177919 - 5178177
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| | |||||||||||||||||||||||||||    
T  5177919 atgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagt 5178018  T
Q  101 ttatctcgtatatgatgagccaatccgtgaaaatatggagcaatgtcaagaacaaggagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat 200  Q
    |||||||||||||||||| |||||  | ||||| ||||||||||| |||||||||| ||||      ||||||||||||||||||||||||||||||| |    
T  5178019 ttatctcgtatatgatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgcttt 5178112  T
Q  201 -taagagaggtctcttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaaatga 264  Q
     | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5178113 gtcagagaagtctcttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaaatga 5178177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 5279744 - 5280008
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| | |||||||||||||||||||||||||||    
T  5279744 atgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagt 5279843  T
Q  101 ttatctcgtatatgatgagccaatccgtgaaaatatggagcaa---tgtcaagaacaaggagaaaatgatattgtgtgtagtggtgatgaagatgaatgc 197  Q
    |||||||||||||||||| |||||  | ||||| |||||||||   || |||||||||| ||||      ||||||||||||||||||||||||||||||    
T  5279844 ttatctcgtatatgatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgc 5279937  T
Q  198 tat-taagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 264  Q
    | | | ||||| |||||||||||||||||||| ||| ||||||||||   |||||||||||||||||||||    
T  5279938 tttgtcagagaagtctcttctaatgcacaagaatacaatgtcattgttagtagtagtggtgatgaaaatga 5280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
Q  14 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtatat 113  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| | | |||||||||||||||| |||  ||||||||||||||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  114 gatgagccaat 124  Q
    ||||| |||||    
T  5242514 gatgaaccaat 5242504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 5126732 - 5126597
Alignment:
Q  13 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtata 112  Q
    ||||||||||||||||||||||| || |||||||||| ||| |||||  ||||||| | | |||||||||||||||||| ||| | ||||||||| ||||    
T  5126732 agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata 5126633  T
Q  113 tgatgagccaatccgtgaaaatatggagcaatgtca 148  Q
    |||||| |||||  |||||| |||| ||||||||||    
T  5126632 tgatgaaccaattggtgaaactatgaagcaatgtca 5126597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 5398226 - 5398341
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||||||||| || || ||||||||||||||||||||| |||||||||| |||||||| | |||||| || |  | ||||||||||||||| ||||||||    
T  5398226 atgaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagt 5398325  T
Q  101 ttatctcgtatatgat 116  Q
    |||||| |||||||||    
T  5398326 ttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5346209 - 5346326
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||   |||| |||| |  ||||||||||||||||| ||| || |    
T  5346209 atgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaat 5346308  T
Q  101 ttatctcgtatatgatga 118  Q
    ||||||| ||||||||||    
T  5346309 ttatctcatatatgatga 5346326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
Q  15 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtatatg 114  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| | | ||||| |||||| ||| |||  |||||||||||||||||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  115 atgagccaat 124  Q
    |||| |||||    
T  5427194 atgaaccaat 5427203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 5180889 - 5180773
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||||||||| ||||| ||||||||||| ||||||||  |||||||||||||||| |||| ||||||||| |   |||||||||||||||| ||| || |    
T  5180889 atgaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaat 5180790  T
Q  101 ttatctcgtatatgatg 117  Q
    |||||| ||||||||||    
T  5180789 ttatctggtatatgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 5065564 - 5065441
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||| ||||| |||||||||||||||||||| |||||| | || ||||||||  |||||  ||||||||| | ||||||| |||||||||  ||||||||    
T  5065564 atgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagt 5065465  T
Q  101 ttatctcgtatatgatgagccaat 124  Q
    ||||||| |||||||||| |||||    
T  5065464 ttatctcatatatgatgaaccaat 5065441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 5100916 - 5100816
Alignment:
Q  18 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 117  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| | | ||||||||||||| || ||| |||||||||||||||| ||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  118 a 118  Q
    |    
T  5100816 a 5100816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 5136017 - 5135917
Alignment:
Q  18 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 117  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| | | ||||||||||||| || ||| |||||||||||||||| ||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  118 a 118  Q
    |    
T  5135917 a 5135917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 5156128 - 5156011
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||   || |||||| || |    ||||||||||||||| ||||||||    
T  5156128 atgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagt 5156029  T
Q  101 ttatctcgtatatgatga 118  Q
    |||||| ||||| |||||    
T  5156028 ttatcttgtatacgatga 5156011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 23127407 - 23127308
Alignment:
Q  19 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 118  Q
    |||||||||||  ||||||| |||||||| |||||||||||   |||||||| |  |||||| |||||||||| |||||||||||||| |||||||||||    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 5098402 - 5098508
Alignment:
Q  12 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtat 111  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||  ||  |||||| || | | ||||||||||||| || ||| |||||||||| ||||    
T  5098402 cagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtat 5098501  T
Q  112 atgatga 118  Q
    |||||||    
T  5098502 atgatga 5098508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5372277 - 5372394
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||||||||| ||||| |||||||||||| |||||||| |||||||||||||| |   || |||| | || |  | ||||||||||||||| |||||| |    
T  5372277 atgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaat 5372376  T
Q  101 ttatctcgtatatgatga 118  Q
    |||||||||||| |||||    
T  5372377 ttatctcgtatacgatga 5372394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 5283328 - 5283223
Alignment:
Q  12 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtat 111  Q
    ||||| ||| |||||||||| |||||  ||||||||||||||||  | | ||||||||| | | |||||||||||||||| ||| || ||||||| ||||    
T  5283328 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtat 5283229  T
Q  112 atgatg 117  Q
    ||||||    
T  5283228 atgatg 5283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5351580 - 5351697
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||| ||||| |||||  |||||||||||||||||||  ||||||||||||||||  ||| |||||| || |  | || ||||||||| || |||  |||    
T  5351580 atgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagt 5351679  T
Q  101 ttatctcgtatatgatga 118  Q
    ||||||||||||||||||    
T  5351680 ttatctcgtatatgatga 5351697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 5253718 - 5253833
Alignment:
Q  6 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatc 105  Q
    ||||| || |||||| ||| |||||| |||||| | || ||||||||| |||||  ||||||||| | | |||||||||||||||  || ||||||||||    
T  5253718 gaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatc 5253817  T
Q  106 tcgtatatgatgagcc 121  Q
    || ||||||| |||||    
T  5253818 tcatatatgacgagcc 5253833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5352978 - 5352863
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||| ||||| |||||||||||||||||||| || ||| || ||||||| ||||| |||  |||||| || |   ||||||| |||||||| |||||| |    
T  5352978 atgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaat 5352879  T
Q  101 ttatctcgtatatgat 116  Q
    |||||| |||||||||    
T  5352878 ttatctggtatatgat 5352863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
Q  23 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 117  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  | |  | ||||||||  || || ||| ||| |||||||||||||||||    
T  5439213 atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg 5439307  T

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Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2939095 - 2939212
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    ||||||| || ||||| |||||||||||| || ||||| ||||||||||||||||   || |||| | || |  | || ||||||||||||  ||||| |    
T  2939095 atgaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaat 2939194  T
Q  101 ttatctcgtatatgatga 118  Q
    ||||||||||||||||||    
T  2939195 ttatctcgtatatgatga 2939212  T

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Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 5072785 - 5072680
Alignment:
Q  13 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtata 112  Q
    ||||| |||||||||||||||| ||| ||||| |||||||||||||   |||| |||| | || |||||||||||| || |||| | |||||||| ||||    
T  5072785 agagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatata 5072686  T
Q  113 tgatga 118  Q
     |||||    
T  5072685 cgatga 5072680  T

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Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5334365 - 5334431
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttt 67  Q
    ||||||||||  |||| ||||||||| || |||||||| |||||||||||||||| |||| ||||||    
T  5334365 atgaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgtttt 5334431  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 5256218 - 5256113
Alignment:
Q  12 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtat 111  Q
    ||||| ||| |||||||||| |||||  |||||||||||||||| || | ||||||  | |  | ||||||||||||||| ||| || ||||| | ||||    
T  5256218 cagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtat 5256119  T
Q  112 atgatg 117  Q
    ||||||    
T  5256118 atgatg 5256113  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 5124553 - 5124461
Alignment:
Q  6 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaaca 98  Q
    ||||| || ||| ||||||| |||||||||||| |||| ||||||||  |||||| ||||||| | | | | |||||||||||| | ||||||    
T  5124553 gaggggcatagattagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaaca 5124461  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
Q  17 agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---cagcggtttcattgtgaagaaaacaacagtttatctcgtatat 113  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||     || ||||||  |||||||| ||||||||||||||||||||     
T  25569036 agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac 25569135  T
Q  114 gatgagccaatccgtgaaaatatggagcaatgtcaagaacaaggagaaaatgatattgtgtgtagtggtgatgaagatgaat 195  Q
    ||||| | |||  | ||||  ||||||||| |||||  |  || |||||||| |||||| | || |||||||||| ||||||    
T  25569136 gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat 25569217  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 4122747 - 4122615
Alignment:
Q  13 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtata 112  Q
    ||||||| ||||||| ||| |||||| || ||||||||||| |||||  ||||||||  | | |||||||||||| ||| ||| ||||||||||| ||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  113 tgatgagccaatccgtgaaaatatggagcaatg 145  Q
    |||||| |||||| ||||||| || ||||||||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatg 4122615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 4132719 - 4132586
Alignment:
Q  12 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtat 111  Q
    |||||||||||||||| ||| |||||| || ||||||| ||| |||||   |||||||  | | |||||||||||| ||| ||| ||||||||||| |||    
T  4132719 cagagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4132623  T
Q  112 atgatgagccaatccgtgaaaatatggagcaatgtca 148  Q
    ||||||| |||||  |||||||| ||| |||||||||    
T  4132622 atgatgaaccaattggtgaaaatttggggcaatgtca 4132586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 4319406 - 4319300
Alignment:
Q  12 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtat 111  Q
    |||||||| ||| ||| ||| |||||| || |||| |||||| |||||   |||||||  | | |||||||||||| ||| ||| ||||||||||| |||    
T  4319406 cagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4319307  T
Q  112 atgatga 118  Q
    |||||||    
T  4319306 atgatga 4319300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
Q  78 ttcattgtgaagaaaacaacagtttatctcgtatatgatgagccaat 124  Q
    ||||||||||||||||||||| ||||||| || |||||||| |||||    
T  7884193 ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat 7884147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 47985496 - 47985393
Alignment:
Q  13 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtata 112  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| |  ||||||||||||||||  | | |||||||||| |||||    
T  47985496 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47985397  T
Q  113 tgat 116  Q
    ||||    
T  47985396 tgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 48004070 - 48003967
Alignment:
Q  13 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtata 112  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| |  ||||||||||||||||  | | |||||||||| |||||    
T  48004070 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48003971  T
Q  113 tgat 116  Q
    ||||    
T  48003970 tgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 47994783 - 47994680
Alignment:
Q  13 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtata 112  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| |  ||||||||||||||||  | | |||||||||| |||||    
T  47994783 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47994684  T
Q  113 tgat 116  Q
    ||||    
T  47994683 tgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 48013355 - 48013252
Alignment:
Q  13 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtata 112  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| |  ||||||||||||||||  | | |||||||||| |||||    
T  48013355 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48013256  T
Q  113 tgat 116  Q
    ||||    
T  48013255 tgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 36213036 - 36212913
Alignment:
Q  1 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagt 100  Q
    |||| ||||| |||||| |||||||||||||||||||| || | ||| |||||||||||  ||||||||| | |  ||||||||||||||| ||| |  |    
T  36213036 atgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgat 36212937  T
Q  101 ttatctcgtatatgatgagccaat 124  Q
    ||||||| | |||||||| |||||    
T  36212936 ttatctcatttatgatgaaccaat 36212913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
Q  19 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacagcggtttcattgtgaagaaaacaacagtttatctcgtatatga 115  Q
    ||||||||||| |||||||  | ||||||||||||||||||  ||||||||    ||||||||||| |||  |||||||| |||||||  |||||||    
T  7974 tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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