View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_180 (Length: 265)
Name: NF8518A_low_180
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_180 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 31206015 - 31206269
Alignment:
| Q |
5 |
tagaatcaaagatcataatggagcaattggtgaaattcaataaaattattgacgattgagtgaatattgaaagatactctcttttatggaaaggaagaca |
104 |
Q |
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| T |
31206015 |
tagagtcaaagatcataatggagcaattggtgaaattcaataaaattattgacgattgagtgaatattgaaagatgctctcttttatggaaaggaagaca |
31206114 |
T |
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| Q |
105 |
ctgatgttttggataaagtctaattagatattaagaccaagaaactaaccatgtttaaaaacttgaacgtgaaattttgagtgtgtcaagaggaagatgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
31206115 |
ctgatgttttggataaagtctaattagatattaagaccaagaaactaaccatgtttaaaaacttgaacgtgaaactttgagtgtgtcaaaaggaagatgt |
31206214 |
T |
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| Q |
205 |
gaaagtaaaggaaaatgggcggctaaactaaactcatattctagtcacacattga |
259 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
31206215 |
gaaagtaaaggaaaatgggtggctaaactaaaatcatattctagtcacacattga |
31206269 |
T |
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