View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_192 (Length: 260)
Name: NF8518A_low_192
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_192 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 33063877 - 33064125
Alignment:
| Q |
2 |
caaatgagttttagctcgggacggactaactcttataatcattgacaatggccttcttttatnnnnnnnnnntgctaatatttgaccatactatatactc |
101 |
Q |
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| T |
33063877 |
caaatgagttttagctcgggacggactgactcttataatcattgacaatggccttctttt-tattaaaaaaatgctaatatttgacaatactatatactc |
33063975 |
T |
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| Q |
102 |
tcagtctttctgatgcatgatgatggttatctataccgttttctaaaaacataacatattaaatcattcattctaactgaactgatcttgtacaacagtt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063976 |
tcagtctttctgatgcatgatgatggttatctataccgttttctaaaaacataacatattaaatcattcattctaactgaactgatcttgtacaacagtt |
33064075 |
T |
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| Q |
202 |
gatcaaataaatgtccgttaaatactgttcatactgggcatgatattgtt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33064076 |
gatcaaataaatgtccgttaaatactgttcatactgggcatgatattgtt |
33064125 |
T |
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