View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_205 (Length: 253)
Name: NF8518A_low_205
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_205 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 5108085 - 5107867
Alignment:
| Q |
15 |
gaggaataaggacaccggctttgtatattctatgcttccacagttgtccttttgnnnnnnnccaacaacatcatgccatttgtatccttaaacacatcga |
114 |
Q |
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| T |
5108085 |
gaggaataaggacaccggctttgtatattctatgcttccacagttgtccttttgtttttttccaacaacatcatgccatttgtatccttaaacacatcga |
5107986 |
T |
|
| Q |
115 |
cctatgtcttcttctgcctccaacaattcactctttctttgtctctcacaaacacatctcttcatatatagttatagttatacattgtatctaaacttca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5107985 |
cctatgtcttcttctgcctccaacaattcactctttctttgtctctcacaaacacatctcttcatatatagttatagttatacattgcatctaaacttca |
5107886 |
T |
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| Q |
215 |
accattgacatgcataaaa |
233 |
Q |
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||||||||||||||||||| |
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| T |
5107885 |
accattgacatgcataaaa |
5107867 |
T |
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