View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_206 (Length: 253)
Name: NF8518A_low_206
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_206 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 30797719 - 30797507
Alignment:
| Q |
12 |
atattggtatcaaaggatacattcttatcattataattaataaatgtacacattcatcactattgtgtgaagtagagtcaagctagcgacactaaaaagc |
111 |
Q |
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| T |
30797719 |
atattggtatcaaaggatacattcttatcattataattaataaatgtacacattcatcactattgtgtgaagtagagtcaagctagcgacactaaac--- |
30797623 |
T |
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| Q |
112 |
aatggagaaacttattacaaattgttggtgaagcacataagggtgatagaaccaaaataattcaaaaa-ttattaaagctgctcaggagtttggattctt |
210 |
Q |
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| T |
30797622 |
------------tattacaaattgttggtgaagcacataagggtgatagaaccaaaataattcaaaaaattattaaagctgctcagaagtttggattctt |
30797535 |
T |
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| Q |
211 |
taaggttcatatagttcatgccatttat |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
30797534 |
taaggttcatatagttcatgccatttat |
30797507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 30795504 - 30795428
Alignment:
| Q |
154 |
gtgatagaaccaaaataattcaaaaa-ttattaaagctgctcaggagtttggattctttaaggttcatatagttcat |
229 |
Q |
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| T |
30795504 |
gtgatagaaccaatataattcaaaaagttattaaagctgctcaggagttttgattctttcagatttatatagttcat |
30795428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 30801944 - 30801844
Alignment:
| Q |
139 |
gtgaagcacataagggtgatagaaccaaaataattca-aaaattattaaagctgctcaggagtttggattctttaaggttcatatagttcatgccattta |
237 |
Q |
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| T |
30801944 |
gtgaagcatgtaagggtgatagaagcaatataatcaagaaaattatcaaagctgctgaggagtttggattctttcaggttcatctagttcgtgccattta |
30801845 |
T |
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| Q |
238 |
t |
238 |
Q |
| |
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| T |
30801844 |
t |
30801844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 30750625 - 30750547
Alignment:
| Q |
139 |
gtgaagcacataagggtgatagaaccaaaataattcaa-aaattattaaagctgctcaggagtttggattctttaaggt |
216 |
Q |
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| T |
30750625 |
gtgaagcacaaaatggtgatagaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggt |
30750547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 30752436 - 30752358
Alignment:
| Q |
139 |
gtgaagcacataagggtgatagaaccaaaataattcaa-aaattattaaagctgctcaggagtttggattctttaaggt |
216 |
Q |
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| T |
30752436 |
gtgaagcacaaaatggtgatagaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggt |
30752358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 30809350 - 30809270
Alignment:
| Q |
139 |
gtgaagcacataagggtgatagaaccaaaataattca-aaaattattaaagctgctcaggagtttggattctttaaggttc |
218 |
Q |
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| T |
30809350 |
gtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttc |
30809270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 30742093 - 30742049
Alignment:
| Q |
177 |
aaattattaaagctgctcaggagtttggattctttaaggttcata |
221 |
Q |
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| T |
30742093 |
aaattatcaaggctgctcaggagtttggattctttcaggttcata |
30742049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 30762770 - 30762692
Alignment:
| Q |
139 |
gtgaagcacataagggtgatagaaccaaaataattcaa-aaattattaaagctgctcaggagtttggattctttaaggt |
216 |
Q |
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| T |
30762770 |
gtgaagcacaaaatggggatagaaccaaaacaatacaacaaattatcaaggcttctgaggagtttggattctttcaggt |
30762692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 30802081 - 30802047
Alignment:
| Q |
106 |
aaaagcaatggagaaacttattacaaattgttggt |
140 |
Q |
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| T |
30802081 |
aaaagcaatggagaaacttattacaaatcgttggt |
30802047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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