View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_207 (Length: 252)
Name: NF8518A_low_207
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_207 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 11034077 - 11034316
Alignment:
| Q |
8 |
cgaagaatattgcccaatattacttactattgacaagttttttagaagaaaagacatcatactaacaacagaacaagnnnnnnnnnatagtttttgtact |
107 |
Q |
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| T |
11034077 |
cgaaaaatattgcccaatattact----atttacaagttttttagaagaaaagacatcatactaacaacagaacaagtttttttt-atagtttttgtact |
11034171 |
T |
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| Q |
108 |
gaaaatttgttttctaaactttattttaagtcttatgtcttgcttacctatgcgactcgataaacgtgcaactatccaagccacattattccagtaagct |
207 |
Q |
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| T |
11034172 |
gaaaatttgttttctaaactttattttaagtcttatgtcttgcttacctgtgcgactcgataaacatgcaactatccaagccacattattccagtaagct |
11034271 |
T |
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| Q |
208 |
gcaaggacatacacaaagcatagtaacagattaagtgttaattag |
252 |
Q |
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| T |
11034272 |
gcaaggacatacacaaagcatagtaacagattgagtgttaattag |
11034316 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 11008834 - 11008920
Alignment:
| Q |
166 |
gataaacgtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacagattaagtgttaattag |
252 |
Q |
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| T |
11008834 |
gataaacgtgcaactatccaagccgcgttattccagtaatctgcaagagcaaacataaagcatagtgacatattgagtgttatttag |
11008920 |
T |
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