View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_210 (Length: 252)
Name: NF8518A_low_210
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_210 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 31555359 - 31555600
Alignment:
| Q |
5 |
gacagagatgaacttgtcagaatcttcccctattcactcaactcatcaacacacttacatggaatttttaacatcattctagatttcttccatatctgaa |
104 |
Q |
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| T |
31555359 |
gacagagcagaacttgtcagaatcttcccctattcactcaactcatcaacacacttacatggaatgtttaacatcattctagatttcttccatatctgaa |
31555458 |
T |
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| Q |
105 |
agctagaagatttaaacatttgttgaagctttccttccacagaaacaggccaaggtgtacatttgtgcttggtttgctatatagtatattccccatgaaa |
204 |
Q |
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| T |
31555459 |
agctagaagatttaaacatttgttgaagctttccttccacagaaacaggccaaggtgtacatttgtgcttggtttgctatatagtatattccccatgaaa |
31555558 |
T |
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| Q |
205 |
catattaaaattctccttccttctcaaacagactgaggtgta |
246 |
Q |
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| T |
31555559 |
catattaaaattctccttccttctcaaacagactgaggtgta |
31555600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 31558443 - 31558588
Alignment:
| Q |
5 |
gacagagatgaacttgtcagaatcttcccctattcactcaactcatcaacacacttacatggaatttttaacatcattctagatttcttccatatctgaa |
104 |
Q |
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| T |
31558443 |
gacagagcagaacttgtcacaatcttcccctattcaatcaactcatcaacacacctacatggaatgtttaacatcattctagatttcttccatatctgaa |
31558542 |
T |
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| Q |
105 |
agctagaagatttaaacatttgttgaagctttccttccacagaaaca |
151 |
Q |
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| T |
31558543 |
agctagaaga-ttaaacattcattgaagctttccttccacagaaaca |
31558588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 31878101 - 31877923
Alignment:
| Q |
14 |
gaacttgtcagaatcttcccctattcactc-aactcatcaacacacttacatggaatttttaacatcattctagatttcttccatatctgaaagctagaa |
112 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||||||| || ||| |||| |||||||||||||| || |
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| T |
31878101 |
gaacttgtcacaatcttcccctattcactctaactcatcaacacacctacatg-aatgtttaacatcattttatattacttcaatatctgaaagctaaaa |
31878003 |
T |
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| Q |
113 |
gatttaaacatttgttgaagctttccttccacagaaacaggccaaggtgtacatttgtgcttggtttgctatatagtatat |
193 |
Q |
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| T |
31878002 |
tatt-aaacattttttgaagctttccttccacagaaacagaccaaggtgtacatctgtgattggcttacgatatactatat |
31877923 |
T |
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