View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_211 (Length: 251)
Name: NF8518A_low_211
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_211 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37667717 - 37667488
Alignment:
| Q |
1 |
ttgaatgaagatgagctagtgagcatgatgagagaaggtgatcttgatggtgatggtgcactcactgagatggagttttgtgttttgatgtttagattaa |
100 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37667717 |
ttgaaggaagatgagcttgtgagcatgatgagagaaggtgatcttgatggtgatggtgcactcactgagatggagttttgtgttttgatgtttagattaa |
37667618 |
T |
|
| Q |
101 |
gtcctcaattgatggaagagtcatggtttttgcttgaagaagcattggatcatgaacttaacaatagcaagtagcaaccattcattttaaagagtcattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37667617 |
gtcctcaattgatggaagagtcatggtttttgcttgaagaagcattggatcatgaactt---------aagtagcaaccattcattttaaagagtcattg |
37667527 |
T |
|
| Q |
201 |
ttcttttgactattttgattcttttttacatttgatatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37667526 |
ttcttttgactattttgattcttttttacatttgatatt |
37667488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 34232693 - 34232764
Alignment:
| Q |
34 |
gaaggtgatcttgatggtgatggtgcactcactgagatggagttttgtgttttgatgtttagattaagtcct |
105 |
Q |
| |
|
||||||||| |||||||||||||||| || | | | ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
34232693 |
gaaggtgattttgatggtgatggtgctcttaatcaaatggagttttgtgttttgatgtttagacttagtcct |
34232764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 21941618 - 21941736
Alignment:
| Q |
25 |
atgatgagagaaggtgatcttgatggtgatggtgcactcactgagatggagttttgtgttttgatgtttagattaagtcctcaattgatggaagagtcat |
124 |
Q |
| |
|
||||||| ||||||||| | ||| | ||||| ||||| ||| |||||||||||||||||||||||||||| || |||||| |||||||||||||||| | |
|
|
| T |
21941618 |
atgatgaatgaaggtgatttagatagagatggagcacttactcagatggagttttgtgttttgatgtttaggttgagtcctgaattgatggaagagtctt |
21941717 |
T |
|
| Q |
125 |
ggtttttgcttgaagaagc |
143 |
Q |
| |
|
|||||| |||||| ||||| |
|
|
| T |
21941718 |
ggttttggcttgaggaagc |
21941736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 23630677 - 23630741
Alignment:
| Q |
34 |
gaaggtgatcttgatggtgatggtgcactcactgagatggagttttgtgttttgatgtttagatt |
98 |
Q |
| |
|
||||||||| ||||||| |||||||| || | | |||||||||||||| |||||||||||||| |
|
|
| T |
23630677 |
gaaggtgattttgatggagatggtgctcttaaccaaatggagttttgtgtcttgatgtttagatt |
23630741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University