View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_215 (Length: 250)
Name: NF8518A_low_215
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_215 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 2943118 - 2943339
Alignment:
| Q |
28 |
ctgttcctattctttgcttataagatctgataggaaactggnnnnnnnnaaagattaataactggatgatccgtgatcacagttcatataaaagggcatt |
127 |
Q |
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| T |
2943118 |
ctgttcctattctttgcttataagatctgataggaaactgggtttttttaaagattaataacaggatgatccgtgatcacagttcatataaaagggcatt |
2943217 |
T |
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| Q |
128 |
gttaaaattataacgaaggaacatttagttcatataagaatttgtttggtcagattatctctagtcagtgagttgaattgactgcatcacatggcaagga |
227 |
Q |
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| T |
2943218 |
gtaaaaattataacgaaggaacatttagttcatataagaatttgtttggtca-aatatctctagtcagtgagttgaattgactgcatcacatggcaagga |
2943316 |
T |
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| Q |
228 |
aaataacaaatgcatgtccagat |
250 |
Q |
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| T |
2943317 |
aaataacaaatgcatgtccagat |
2943339 |
T |
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