View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_219 (Length: 250)
Name: NF8518A_low_219
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_219 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 29668834 - 29669073
Alignment:
| Q |
11 |
atgaacaacgccatttcagatcgtaaggaaaccccttctgacgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29668834 |
atgaacaacgccatttcagatcgtaaggaaaccccttctgatgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgcca |
29668933 |
T |
|
| Q |
111 |
cgattctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29668934 |
cgattctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccgaa |
29669033 |
T |
|
| Q |
211 |
agttgaggagaaaataatcaaggagttaaccactgttctt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29669034 |
agttgaggagaaaataatcaaggagttaaccactgttctt |
29669073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 11315133 - 11315194
Alignment:
| Q |
134 |
aacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggt |
195 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||||| | ||||||||||| ||| |||| |
|
|
| T |
11315133 |
aacttcatcctagctggacgtgacacgtcatcagttgcgttgagctggttcttttggttggt |
11315194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University