View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_222 (Length: 250)

Name: NF8518A_low_222
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_222
NF8518A_low_222
[»] chr3 (27 HSPs)
chr3 (16-245)||(41985620-41985852)
chr3 (16-243)||(41980846-41981073)
chr3 (24-126)||(9494822-9494924)
chr3 (24-245)||(9448314-9448535)
chr3 (24-140)||(9343845-9343961)
chr3 (32-140)||(9329844-9329952)
chr3 (32-140)||(9336548-9336656)
chr3 (24-140)||(9407366-9407482)
chr3 (24-137)||(9655360-9655473)
chr3 (24-137)||(9425573-9425686)
chr3 (24-137)||(9646367-9646480)
chr3 (24-140)||(9617463-9617579)
chr3 (32-140)||(9695616-9695724)
chr3 (32-125)||(9340679-9340772)
chr3 (38-140)||(9416587-9416689)
chr3 (24-140)||(9397785-9397903)
chr3 (36-126)||(9352913-9353003)
chr3 (32-125)||(9347995-9348088)
chr3 (32-125)||(9369649-9369742)
chr3 (25-146)||(9756381-9756502)
chr3 (24-140)||(9432896-9433012)
chr3 (24-132)||(9626488-9626596)
chr3 (38-106)||(9441815-9441883)
chr3 (32-84)||(9614009-9614061)
chr3 (92-140)||(9686751-9686799)
chr3 (28-87)||(9377090-9377149)
chr3 (25-54)||(16011768-16011797)
[»] chr8 (2 HSPs)
chr8 (80-245)||(13170579-13170744)
chr8 (22-245)||(44688680-44688903)
[»] chr1 (8 HSPs)
chr1 (16-245)||(18991196-18991422)
chr1 (24-122)||(235213-235311)
chr1 (24-91)||(4439860-4439927)
chr1 (21-135)||(4428628-4428742)
chr1 (24-117)||(8814385-8814478)
chr1 (24-122)||(251412-251510)
chr1 (32-117)||(231589-231674)
chr1 (24-115)||(246867-246958)
[»] chr2 (1 HSPs)
chr2 (24-137)||(20694304-20694417)
[»] chr6 (7 HSPs)
chr6 (24-140)||(7041496-7041612)
chr6 (24-122)||(7046839-7046937)
chr6 (61-122)||(7025793-7025854)
chr6 (61-122)||(7029850-7029911)
chr6 (61-122)||(9170854-9170915)
chr6 (61-120)||(9159515-9159574)
chr6 (61-122)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (21-127)||(3695687-3695792)
chr7 (32-140)||(450111-450219)
[»] chr5 (1 HSPs)
chr5 (24-126)||(18571108-18571213)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 41985620 - 41985852
Alignment:
Q  16 gacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985620 gacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 41985719  T
Q  116 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaac---tcacgct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||| ||    
T  41985720 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccct 41985819  T
Q  213 cactctctaccaggaatttcatgtcccctccat 245  Q
    |||||||||||||||||||||||||||||||||    
T  41985820 cactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 41980846 - 41981073
Alignment:
Q  16 gacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 115  Q
    |||| |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  41980846 gacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctct 41980945  T
Q  116 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcac 215  Q
    |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| |||||||| || |||| |||||    
T  41980946 ttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcac 41981045  T
Q  216 tctctaccaggaatttcatgtcccctcc 243  Q
    ||||||||||||||||||  ||||||||    
T  41981046 tctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 9494924 - 9494822
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| || |||||| || |||||||||||||    
T  9494924 acaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatc 9494825  T
Q  124 aag 126  Q
    |||    
T  9494824 aag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 245
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  124 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 223  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  224 aggaatttcatgtcccctccat 245  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 9343845 - 9343961
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| ||||| ||||||||| |||||||    
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatc 9343944  T
Q  124 aagtctgaacacatcaa 140  Q
    |||  | ||||||||||    
T  9343945 aagcttaaacacatcaa 9343961  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 9329844 - 9329952
Alignment:
Q  32 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 131  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || |    
T  9329844 gaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaa 9329943  T
Q  132 acacatcaa 140  Q
    |||||||||    
T  9329944 acacatcaa 9329952  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 9336548 - 9336656
Alignment:
Q  32 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || |    
T  9336548 gaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaa 9336647  T
Q  132 acacatcaa 140  Q
    |||||||||    
T  9336648 acacatcaa 9336656  T

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Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 9407366 - 9407482
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||||||||||||  |||||| |||||| | || | |||||| ||    
T  9407366 acaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtc 9407465  T
Q  124 aagtctgaacacatcaa 140  Q
    |||||| ||||||||||    
T  9407466 aagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 9655473 - 9655360
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9655473 acaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9655374  T
Q  124 aagtctgaacacat 137  Q
    || |||||| ||||    
T  9655373 aaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 9425573 - 9425686
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||| || |||||||  |||||| |||||||| || | |||||| ||    
T  9425573 acaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctattccttaaactcatcaacttcacccattttttattcttctcgtc 9425672  T
Q  124 aagtctgaacacat 137  Q
    |||||| |||||||    
T  9425673 aagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 9646480 - 9646367
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9646480 acaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9646381  T
Q  124 aagtctgaacacat 137  Q
    || |||||| ||||    
T  9646380 aaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 9617579 - 9617463
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||||||| |   |||||| |||||||||||||| |||||||     
T  9617579 acaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatg 9617480  T
Q  124 aagtctgaacacatcaa 140  Q
    ||  |||||||| ||||    
T  9617479 aaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 9695724 - 9695616
Alignment:
Q  32 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 131  Q
    |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| | | |||||||||||| |||||||||||||||||||| ||||    
T  9695724 gaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctga 9695625  T
Q  132 acacatcaa 140  Q
    | |||||||    
T  9695624 atacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  32 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 125  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 9416587 - 9416689
Alignment:
Q  38 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 137  Q
    ||||||||||| ||||||  |||| | |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | ||||||||    
T  9416587 gaagcagaaaatgaacatttattcacgaagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacat 9416686  T
Q  138 caa 140  Q
    |||    
T  9416687 caa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 9397785 - 9397903
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca--tttcttctccttctca 121  Q
    |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||||||||||||  |||||| || ||  ||| || | ||||||     
T  9397785 acaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatcccctaaactcatcaacttcacgcattttttttatacttctcg 9397884  T
Q  122 tcaagtctgaacacatcaa 140  Q
    |||||||| ||||||||||    
T  9397885 tcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 9352913 - 9353003
Alignment:
Q  36 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 126  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |   |||||| ||||| ||||||||| ||||||||||    
T  9352913 cagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttttcaacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 9347995 - 9348088
Alignment:
Q  32 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 125  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9347995 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 9369649 - 9369742
Alignment:
Q  32 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 125  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9369649 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  25 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 124  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  125 agtctgaacacatcaagcttta 146  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 9432896 - 9433012
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| ||||| |||||| ||   | ||| ||||| ||| |||||||||||||    
T  9432896 acaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcctaaattcttgatcttcacccacttcctctccttctcatc 9432995  T
Q  124 aagtctgaacacatcaa 140  Q
    ||||||||| |||||||    
T  9432996 aagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 9626596 - 9626488
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||  ||| || ||||||||||||||||||||||     
T  9626596 acaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcatg 9626497  T
Q  124 aagtctgaa 132  Q
    || ||||||    
T  9626496 aaatctgaa 9626488  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 9441883 - 9441815
Alignment:
Q  38 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccat 106  Q
    ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| ||||||    
T  9441883 gaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccat 9441815  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 9614061 - 9614009
Alignment:
Q  32 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 84  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614061 gaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  92 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 140  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 9377090 - 9377149
Alignment:
Q  28 atccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 87  Q
    |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377090 atcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  25 caaatccgaagcagaagcagaaaacgaaca 54  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

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Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  80 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 179  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  180 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 245  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 44688903 - 44688680
Alignment:
Q  22 agacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctca 121  Q
    ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  ||||| ||||||||||| | |||||||    
T  44688903 agacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctca 44688804  T
Q  122 tcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctcta 221  Q
    |  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||  ||||||||||    
T  44688803 ttgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctcta 44688704  T
Q  222 ccaggaatttcatgtcccctccat 245  Q
    |||||||||| |||||||||||||    
T  44688703 ccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 18991196 - 18991422
Alignment:
Q  16 gacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 115  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||      
T  18991196 gacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttcttt 18991292  T
Q  116 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcac 215  Q
     |||||| ||| || ||||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  ||||    
T  18991293 ctctcattaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcac 18991392  T
Q  216 tctctaccaggaatttcatgtcccctccat 245  Q
     |||||||| ||||||||| ||||||||||    
T  18991393 actctaccaagaatttcatatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 235213 - 235311
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 122  Q
    ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| ||||    
T  235213 acaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcat 235311  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 4439860 - 4439927
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 91  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  4439860 acaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 4428628 - 4428742
Alignment:
Q  21 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 120  Q
    ||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||| ||||||| ||| || ||||||||   | |||||||    
T  4428628 cagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatcccccaaactcgtcaatttcacccatttacgcgccttctc 4428727  T
Q  121 atcaagtctgaacac 135  Q
    |||||| || |||||    
T  4428728 atcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 8814478 - 8814385
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 117  Q
    |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  8814478 acaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctcctt 8814385  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 251510 - 251412
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 122  Q
    |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251510 acaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  32 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 117  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 246867 - 246958
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 115  Q
    |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | |||||||| |||||||||||||||    
T  246867 acaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcc 246958  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 20694417 - 20694304
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | |||  | ||||||||||||||||| |||||    
T  20694417 acaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgtcaaactcacccatttcttctccttttcatc 20694318  T
Q  124 aagtctgaacacat 137  Q
    ||| ||||||||||    
T  20694317 aagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 7041496 - 7041612
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 123  Q
    ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| |||||||||||||| | |||||| ||||| ||||||||||||||||     
T  7041496 acaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcatt 7041595  T
Q  124 aagtctgaacacatcaa 140  Q
    |||| | |||| |||||    
T  7041596 aagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 7046839 - 7046937
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 122  Q
    ||||||| |||  |||||||||||||||||||    ||||||||||||||||| |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  7046839 acaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 7025793 - 7025854
Alignment:
Q  61 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 122  Q
    ||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  61 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 122  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  61 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 122  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  61 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 120  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 7012857 - 7012918
Alignment:
Q  61 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 122  Q
    ||||||||||||||  ||||| |||||||| | |||||| ||||| ||||||||||||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 3695687 - 3695792
Alignment:
Q  21 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 120  Q
    |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  ||||||||  || ||||||| ||||||    
T  3695687 cagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctacaacttga-tcacttcttcttcttctc 3695785  T
Q  121 atcaagt 127  Q
    || ||||    
T  3695786 attaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  32 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 131  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  132 acacatcaa 140  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 18571108 - 18571213
Alignment:
Q  24 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaacttgacccatttcttctccttctc 120  Q
    |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| || ||||| ||||||||||||||    
T  18571108 acaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatttcacccacttcttctccttctc 18571207  T
Q  121 atcaag 126  Q
    ||||||    
T  18571208 atcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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