View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_223 (Length: 250)
Name: NF8518A_low_223
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_223 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 42292780 - 42292553
Alignment:
| Q |
8 |
ggaagtgtaatgctggctaaaattttatgcagggtgaagtgaaatgataaaaggtaaatttggcattttcaacaatttgtagggggtaaaaagattaaat |
107 |
Q |
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| T |
42292780 |
ggaagtgtattgttggctaaaattttatgcagggtgaagtgaaatgataaaaggtaaatttggcattttcaacaatttgtagggggtaaaa-gattaaat |
42292682 |
T |
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| Q |
108 |
gtagggatatcaggtataacttccctatatccaccgtatccttgtaaatttgtgtgccagtagacttcaatcaaattaagaataaacaatcaacttgttc |
207 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42292681 |
gtagggatatcaggtataacttccccatatccaccgtatccttgtaaatttgtgtgccagtagacttcaatcaaattaagaataaacaatcaacttgttc |
42292582 |
T |
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| Q |
208 |
cttactctatcaattttttcacatatata |
236 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
42292581 |
cttaaactatcaattttttcacatatata |
42292553 |
T |
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