View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_225 (Length: 249)

Name: NF8518A_low_225
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_225
NF8518A_low_225
[»] chr8 (34 HSPs)
chr8 (1-179)||(37598916-37599094)
chr8 (189-240)||(4374301-4374352)
chr8 (192-240)||(7818512-7818560)
chr8 (192-240)||(11998494-11998542)
chr8 (192-240)||(16889233-16889281)
chr8 (192-240)||(33114188-33114236)
chr8 (192-240)||(38778192-38778240)
chr8 (192-240)||(44062023-44062071)
chr8 (192-237)||(43481284-43481329)
chr8 (192-240)||(11999080-11999128)
chr8 (192-240)||(16879926-16879974)
chr8 (192-240)||(16889828-16889876)
chr8 (192-240)||(30115405-30115453)
chr8 (192-240)||(33113613-33113661)
chr8 (192-240)||(35237297-35237345)
chr8 (192-240)||(36848197-36848245)
chr8 (192-240)||(39852192-39852240)
chr8 (196-240)||(40309500-40309544)
chr8 (192-240)||(43480654-43480702)
chr8 (193-240)||(10805987-10806034)
chr8 (192-240)||(7819097-7819145)
chr8 (192-240)||(16880518-16880566)
chr8 (192-240)||(30115996-30116044)
chr8 (192-240)||(43591045-43591093)
chr8 (192-240)||(43591616-43591664)
chr8 (192-237)||(4374995-4375040)
chr8 (195-240)||(40907640-40907684)
chr8 (192-237)||(44062599-44062644)
chr8 (192-240)||(2209044-2209092)
chr8 (196-240)||(4373728-4373772)
chr8 (192-240)||(10806437-10806485)
chr8 (192-237)||(38778798-38778843)
chr8 (205-239)||(35237865-35237899)
chr8 (198-240)||(39852803-39852845)
[»] chr7 (28 HSPs)
chr7 (180-240)||(32499275-32499335)
chr7 (192-240)||(36682873-36682921)
chr7 (192-240)||(47814635-47814683)
chr7 (195-240)||(32499872-32499917)
chr7 (192-237)||(36683467-36683512)
chr7 (192-240)||(4894537-4894585)
chr7 (192-240)||(4895082-4895130)
chr7 (196-240)||(18520899-18520943)
chr7 (192-240)||(34853429-34853477)
chr7 (192-240)||(46815062-46815110)
chr7 (192-240)||(47814009-47814057)
chr7 (192-237)||(19816895-19816940)
chr7 (192-237)||(22276079-22276124)
chr7 (192-237)||(42456519-42456564)
chr7 (192-240)||(19816302-19816350)
chr7 (192-240)||(22275463-22275510)
chr7 (192-240)||(24044043-24044091)
chr7 (192-240)||(30711826-30711874)
chr7 (192-240)||(33806007-33806055)
chr7 (192-240)||(46814443-46814491)
chr7 (193-240)||(46732606-46732653)
chr7 (200-237)||(36620743-36620780)
chr7 (195-240)||(42455962-42456007)
chr7 (192-240)||(27855604-27855651)
chr7 (196-240)||(34853996-34854040)
chr7 (193-240)||(24323982-24324028)
chr7 (202-237)||(46012943-46012978)
chr7 (192-237)||(36620156-36620201)
[»] chr3 (44 HSPs)
chr3 (180-240)||(38575047-38575107)
chr3 (189-240)||(43658895-43658946)
chr3 (192-240)||(3944933-3944981)
chr3 (192-240)||(29342379-29342427)
chr3 (192-240)||(31014375-31014423)
chr3 (192-240)||(42356274-42356322)
chr3 (189-240)||(29342993-29343044)
chr3 (191-240)||(32672203-32672252)
chr3 (195-240)||(37374856-37374901)
chr3 (192-240)||(19555308-19555356)
chr3 (192-240)||(23584883-23584931)
chr3 (192-240)||(23599706-23599754)
chr3 (192-240)||(25025212-25025260)
chr3 (196-240)||(31014924-31014968)
chr3 (192-240)||(37374003-37374051)
chr3 (192-240)||(41875616-41875664)
chr3 (192-240)||(44868045-44868093)
chr3 (192-240)||(47737673-47737721)
chr3 (192-240)||(50687708-50687756)
chr3 (192-240)||(55282421-55282469)
chr3 (193-240)||(49752312-49752359)
chr3 (196-237)||(37374609-37374650)
chr3 (192-237)||(49752913-49752958)
chr3 (192-240)||(8427743-8427791)
chr3 (192-240)||(23584275-23584323)
chr3 (192-240)||(23599098-23599146)
chr3 (192-240)||(25025764-25025812)
chr3 (192-240)||(38575642-38575690)
chr3 (192-240)||(44868618-44868666)
chr3 (193-237)||(50675128-50675172)
chr3 (192-240)||(55281873-55281921)
chr3 (193-240)||(48218630-48218677)
chr3 (204-240)||(19555923-19555959)
chr3 (192-240)||(24220617-24220665)
chr3 (200-240)||(40887941-40887981)
chr3 (192-240)||(48219235-48219283)
chr3 (197-240)||(37375468-37375511)
chr3 (194-240)||(47737103-47737149)
chr3 (199-240)||(32672783-32672824)
chr3 (196-240)||(24221172-24221216)
chr3 (196-240)||(43103941-43103985)
chr3 (193-232)||(43658294-43658332)
chr3 (207-240)||(8427269-8427302)
chr3 (197-234)||(50687145-50687182)
[»] chr1 (32 HSPs)
chr1 (189-240)||(48843962-48844013)
chr1 (192-240)||(1403078-1403126)
chr1 (195-240)||(49533784-49533829)
chr1 (192-240)||(42839548-42839596)
chr1 (192-240)||(43368835-43368883)
chr1 (192-240)||(52859788-52859836)
chr1 (192-238)||(27817006-27817052)
chr1 (199-240)||(6288204-6288245)
chr1 (192-240)||(1403688-1403735)
chr1 (192-240)||(7219648-7219695)
chr1 (192-240)||(7782691-7782739)
chr1 (192-240)||(8560194-8560242)
chr1 (192-240)||(27797155-27797203)
chr1 (192-240)||(42838975-42839023)
chr1 (193-237)||(42840316-42840360)
chr1 (196-240)||(48369524-48369568)
chr1 (193-240)||(27797736-27797783)
chr1 (189-240)||(51247863-51247914)
chr1 (194-240)||(7219048-7219094)
chr1 (198-240)||(37725423-37725465)
chr1 (191-240)||(27934295-27934343)
chr1 (199-240)||(41563792-41563833)
chr1 (192-240)||(8560743-8560790)
chr1 (192-240)||(41563217-41563265)
chr1 (192-240)||(42839739-42839787)
chr1 (192-240)||(43368228-43368276)
chr1 (196-240)||(48843622-48843666)
chr1 (192-240)||(49534396-49534444)
chr1 (192-240)||(51248483-51248531)
chr1 (189-240)||(52859184-52859235)
chr1 (206-240)||(6287672-6287706)
chr1 (197-238)||(37725672-37725713)
[»] scaffold0229 (1 HSPs)
scaffold0229 (192-240)||(15233-15281)
[»] scaffold0007 (1 HSPs)
scaffold0007 (192-240)||(11303-11351)
[»] chr5 (18 HSPs)
chr5 (192-240)||(3957538-3957586)
chr5 (189-240)||(42408565-42408616)
chr5 (192-240)||(5324403-5324451)
chr5 (192-240)||(8813683-8813731)
chr5 (192-240)||(26687538-26687586)
chr5 (192-240)||(26957269-26957317)
chr5 (196-240)||(33430084-33430128)
chr5 (189-240)||(3739035-3739086)
chr5 (197-240)||(3739663-3739706)
chr5 (193-240)||(13738099-13738146)
chr5 (192-237)||(4929509-4929554)
chr5 (192-240)||(28075969-28076017)
chr5 (201-240)||(21770045-21770084)
chr5 (193-240)||(42408031-42408078)
chr5 (198-240)||(4928915-4928957)
chr5 (196-237)||(3958137-3958178)
chr5 (205-240)||(26688057-26688092)
chr5 (205-240)||(26957788-26957823)
[»] chr4 (47 HSPs)
chr4 (192-240)||(199226-199274)
chr4 (192-240)||(12640003-12640051)
chr4 (192-240)||(20075563-20075611)
chr4 (192-240)||(25370392-25370440)
chr4 (192-240)||(26424404-26424452)
chr4 (192-240)||(32291053-32291101)
chr4 (192-240)||(36945223-36945271)
chr4 (192-240)||(48091095-48091143)
chr4 (192-240)||(55816450-55816498)
chr4 (193-240)||(25369822-25369869)
chr4 (193-240)||(55815864-55815911)
chr4 (192-237)||(48782077-48782122)
chr4 (192-240)||(2713843-2713891)
chr4 (192-240)||(20422731-20422779)
chr4 (192-240)||(29809087-29809135)
chr4 (192-240)||(31876826-31876874)
chr4 (192-240)||(32901889-32901937)
chr4 (192-240)||(32902465-32902513)
chr4 (192-240)||(36944648-36944696)
chr4 (192-240)||(37567474-37567522)
chr4 (192-240)||(40847715-40847763)
chr4 (192-240)||(52597528-52597576)
chr4 (196-240)||(52597711-52597755)
chr4 (197-240)||(20076186-20076229)
chr4 (197-240)||(28223606-28223649)
chr4 (193-240)||(40848130-40848177)
chr4 (192-239)||(48090504-48090551)
chr4 (192-237)||(388791-388836)
chr4 (192-237)||(12640589-12640634)
chr4 (198-239)||(26423803-26423844)
chr4 (192-240)||(199037-199085)
chr4 (192-240)||(389405-389453)
chr4 (192-240)||(3708811-3708859)
chr4 (196-240)||(6862689-6862733)
chr4 (193-237)||(31877435-31877479)
chr4 (192-240)||(35427284-35427331)
chr4 (192-240)||(36111217-36111264)
chr4 (193-237)||(40345133-40345177)
chr4 (192-239)||(33569758-33569805)
chr4 (192-237)||(31842726-31842770)
chr4 (192-240)||(40344541-40344589)
chr4 (190-240)||(37566939-37566989)
chr4 (193-239)||(47328397-47328443)
chr4 (198-240)||(48781526-48781568)
chr4 (193-231)||(47321798-47321836)
chr4 (193-222)||(35428208-35428237)
chr4 (192-228)||(20422169-20422205)
[»] chr2 (34 HSPs)
chr2 (192-240)||(4386960-4387008)
chr2 (192-240)||(7716709-7716757)
chr2 (192-240)||(9224304-9224352)
chr2 (192-240)||(28224388-28224436)
chr2 (192-240)||(39477325-39477373)
chr2 (192-237)||(6849326-6849371)
chr2 (192-237)||(6849545-6849590)
chr2 (192-240)||(467143-467191)
chr2 (192-240)||(3595284-3595332)
chr2 (192-240)||(10883325-10883373)
chr2 (192-240)||(11256154-11256202)
chr2 (192-240)||(16571156-16571204)
chr2 (192-240)||(16887621-16887669)
chr2 (192-240)||(20243591-20243639)
chr2 (192-240)||(20244171-20244219)
chr2 (196-240)||(28223830-28223874)
chr2 (192-240)||(30161971-30162019)
chr2 (192-240)||(40165911-40165959)
chr2 (193-240)||(7583793-7583840)
chr2 (192-237)||(8963542-8963587)
chr2 (192-240)||(3595895-3595943)
chr2 (192-240)||(8113300-8113348)
chr2 (192-240)||(11256740-11256788)
chr2 (192-240)||(16571726-16571774)
chr2 (192-237)||(16903092-16903137)
chr2 (192-237)||(40166846-40166891)
chr2 (192-240)||(7583170-7583218)
chr2 (192-240)||(7717285-7717332)
chr2 (192-228)||(8112718-8112754)
chr2 (192-240)||(33847911-33847959)
chr2 (193-240)||(17918060-17918107)
chr2 (193-240)||(39476554-39476601)
chr2 (205-240)||(17918685-17918720)
chr2 (198-240)||(467341-467383)
[»] chr6 (15 HSPs)
chr6 (193-240)||(6032197-6032244)
chr6 (194-240)||(12809702-12809748)
chr6 (196-240)||(5523242-5523286)
chr6 (192-240)||(30610749-30610797)
chr6 (192-240)||(30611345-30611393)
chr6 (192-240)||(33668259-33668307)
chr6 (196-240)||(5523846-5523890)
chr6 (192-240)||(6032753-6032801)
chr6 (196-240)||(12809111-12809155)
chr6 (192-240)||(13944328-13944376)
chr6 (192-240)||(31723871-31723919)
chr6 (179-240)||(31724448-31724510)
chr6 (192-240)||(13936640-13936688)
chr6 (198-237)||(33668833-33668872)
chr6 (196-240)||(33648163-33648207)
[»] scaffold1095 (1 HSPs)
scaffold1095 (192-240)||(1523-1571)
[»] scaffold0368 (1 HSPs)
scaffold0368 (192-240)||(11784-11832)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 37598916 - 37599094
Alignment:
Q  1 tgatgatccacaaaacacaagtcacgtcaaagatcacgcggagaagcacgttcagatctgtgtcgtaattctctcaatgtttcaacaagatcacaccaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37598916 tgatgatccacaaaacacaagtcatgtcaaagatcacgcggagaagcacgttcagatttgtgtcgtaattctctcaatgtttcaacaagatcacaccaat 37599015  T
Q  101 tatccctaatctttgcttataaaaggattcacatgtacacattcttttattaaacctctcactctactcaatcctttga 179  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  37599016 tatccctaatctttgcttataaaaggattcacatgtacacatttttttattaaacctctcactctactcaatcatttga 37599094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 4374352 - 4374301
Alignment:
Q  189 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4374352 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 4374301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 7818512 - 7818560
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7818512 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 7818560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 11998494 - 11998542
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998494 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 11998542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 16889233 - 16889281
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16889233 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 16889281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 33114236 - 33114188
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33114236 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 33114188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 38778192 - 38778240
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38778192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 38778240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 44062023 - 44062071
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44062023 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 44062071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 43481329 - 43481284
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43481329 catgggaaagttggattcaatgattagattaagtgaagaacatatt 43481284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 11999128 - 11999080
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11999128 catgggaaagttggattcaatgattagatgaagtgaagaacatattctt 11999080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 16879926 - 16879974
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16879926 catgagaaagttggattcaatgattagattaagtgaagaacatattctt 16879974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 16889876 - 16889828
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16889876 catgggaaagttggattcaattattagattaagtgaagaacatattctt 16889828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 30115405 - 30115453
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30115405 catggaaaagttggattcaatgattagattaagtgaagaacatattctt 30115453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 33113613 - 33113661
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33113613 catgggaaagttggattcaatgattagattaagtgaagaatatattctt 33113661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 35237297 - 35237345
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35237297 catgggaaagttggattcaatgattagattaagtgaataacatattctt 35237345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 36848245 - 36848197
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36848245 catggaaaagttggattcaatgattagattaagtgaagaacatattctt 36848197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 39852192 - 39852240
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39852192 catgggaaagtttgattcaatgattagattaagtgaagaacatattctt 39852240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 40309544 - 40309500
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40309544 ggaaagttggattcaatgattagattaagtgaagaacatattctt 40309500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 43480654 - 43480702
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43480654 catgggaaagttggattaaatgattagattaagtgaagaacatattctt 43480702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 10805987 - 10806034
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10805987 atgggaaagttggattcaatgattagattaaatgaagaacatattctt 10806034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 7819145 - 7819097
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  7819145 catgcgaaagttagattcaatgattagattaagtgaagaacatattctt 7819097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 16880566 - 16880518
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  16880566 catgtgaaagttagattcaatgattagattaagtgaagaacatattctt 16880518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 30116044 - 30115996
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  30116044 catgggaaagttggattcaatgattagattaagtaaagaatatattctt 30115996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 43591045 - 43591093
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  43591045 catgggaaagttgaattcaatgattagattaaatgaagaacatattctt 43591093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 43591664 - 43591616
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||    
T  43591664 catgggaaagttagagtcaatgattagattaagtgaagaacatattctt 43591616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 4375040 - 4374995
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||    
T  4375040 catgagaaagttggattcaatgattggattaagtgaagaacatatt 4374995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 40907640 - 40907684
Alignment:
Q  195 gggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  40907640 gggaaagttg-attcaatgattagattaagtgaagaacatattctt 40907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 44062644 - 44062599
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  44062644 catgggaaagttggattcaatgattagattaagtggagaatatatt 44062599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 2209044 - 2209092
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  2209044 catgagaaagttcgattcaatgattagattaagtgaataacatattctt 2209092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 4373728 - 4373772
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||    
T  4373728 ggaaagttgaattcaatgattatattaagtgaagaacatattctt 4373772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 10806485 - 10806437
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  10806485 catgggaaagtttgattcaatgattaaattaagtaaagaacatattctt 10806437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 38778843 - 38778798
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||    
T  38778843 catgagaaagttgtattcaatgattagattaagtgaagaatatatt 38778798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 35237899 - 35237865
Alignment:
Q  205 gattcaatgattagattaagtgaagaacatattct 239  Q
    |||||||| ||||||||||||||||||||||||||    
T  35237899 gattcaataattagattaagtgaagaacatattct 35237865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 39852845 - 39852803
Alignment:
Q  198 aaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||| |||||||| |||||||||||||||||| ||||||||    
T  39852845 aaagttagattcaattattagattaagtgaagaatatattctt 39852803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 32499275 - 32499335
Alignment:
Q  180 ggtgtgtgctcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32499275 ggtgtgtgttcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 32499335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 36682873 - 36682921
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36682873 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 36682921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 47814683 - 47814635
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47814683 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 47814635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 32499917 - 32499872
Alignment:
Q  195 gggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32499917 gggaaagttggattcaatgattagattaagtgaagaacatattctt 32499872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 36683512 - 36683467
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36683512 catgggaaagttggattcaatgattagattaagtgaagaacatatt 36683467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 4894537 - 4894585
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4894537 catgggaaagttgaattcaatgattagattaagtgaagaacatattctt 4894585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 4895130 - 4895082
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4895130 catgggaaagttggattcaattattagattaagtgaagaacatattctt 4895082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 18520899 - 18520943
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18520899 ggaaagttggattcaatgattagattaagtgaagaacatattctt 18520943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 34853429 - 34853477
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34853429 catgggaaagttgaattcaatgattagattaagtgaagaacatattctt 34853477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 46815110 - 46815062
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46815110 catgggaaagttggattcaatgattagattaaatgaagaacatattctt 46815062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 47814009 - 47814057
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47814009 catggaaaagttggattcaatgattagattaagtgaagaacatattctt 47814057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 19816940 - 19816895
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19816940 catgggaaagttggattaaatgattagattaagtgaagaacatatt 19816895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 22276124 - 22276079
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  22276124 catgggaaagttggattcaatgattagattaaatgaagaacatatt 22276079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 42456564 - 42456519
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  42456564 catgggaaagttggattcaatgattacattaagtgaagaacatatt 42456519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 19816302 - 19816350
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  19816302 catgggaaagttggattcaatgattagattaagtgtaaaacatattctt 19816350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 22275463 - 22275510
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22275463 catgggaaagttg-attcaatgattagattaagtgaagaacatattctt 22275510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 24044091 - 24044043
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  24044091 catgggaaagttttattcaatgattagattaagtgaagaacatattctt 24044043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 30711826 - 30711874
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  30711826 catggaaaagttggattcaattattagattaagtgaagaacatattctt 30711874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 33806007 - 33806055
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  33806007 catggaaaagttggattcaatgattaaattaagtgaagaacatattctt 33806055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 46814443 - 46814491
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  46814443 catgggaaagttgaattcaacgattagattaagtgaagaacatattctt 46814491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 46732606 - 46732653
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  46732606 atggaaaagttggattcaatgattagattaagtgaataacatattctt 46732653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 36620780 - 36620743
Alignment:
Q  200 agttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36620780 agttggattcaatgattagattaagtgaagaacatatt 36620743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 42455962 - 42456007
Alignment:
Q  195 gggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||    
T  42455962 gggaaaattggattcaatgattaaattaagtgaagaacatattctt 42456007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 27855604 - 27855651
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27855604 catgagaaagttg-attcaatgattagattaagtgaagaacatattctt 27855651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 34854040 - 34853996
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| || |||||||||||||||||||||||||||||||||    
T  34854040 ggaaagttagagtcaatgattagattaagtgaagaacatattctt 34853996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 24324028 - 24323982
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  24324028 atgggaaa-ttggattcaataattagattaagtgaagaacatattctt 24323982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 46012978 - 46012943
Alignment:
Q  202 ttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||    
T  46012978 ttggattcaatgattagattaagtgaagaacatatt 46012943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 36620156 - 36620201
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||| |||||||| |||||||||||| |||||||||| ||||||||    
T  36620156 catgagaaagttgaattcaatgattaaattaagtgaaaaacatatt 36620201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 38575047 - 38575107
Alignment:
Q  180 ggtgtgtgctcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38575047 ggtgtgtgttcacatgggaaagttggattcaatgattagattaaatgaagaacatattctt 38575107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 43658946 - 43658895
Alignment:
Q  189 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43658946 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 43658895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 3944933 - 3944981
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3944933 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 3944981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 29342379 - 29342427
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29342379 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 29342427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 31014375 - 31014423
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31014375 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 31014423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 42356274 - 42356322
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42356274 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 42356322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 29343044 - 29342993
Alignment:
Q  189 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29343044 tcacatggaaaagttggattcaatgattagattaagtgaagaacatattctt 29342993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 32672203 - 32672252
Alignment:
Q  191 acatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32672203 acatgggaaagttggatttaatgattagattaagtgaagaacatattctt 32672252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 37374856 - 37374901
Alignment:
Q  195 gggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37374856 gggaaagttggattcaatgattagattaagtgaagaacatattctt 37374901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 19555308 - 19555356
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19555308 catgggaaagttggattaaatgattagattaagtgaagaacatattctt 19555356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 23584931 - 23584883
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23584931 catggtaaagttggattcaatgattagattaagtgaagaacatattctt 23584883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 23599754 - 23599706
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23599754 catggtaaagttggattcaatgattagattaagtgaagaacatattctt 23599706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 25025212 - 25025260
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25025212 catgggaaagtttgattcaatgattagattaagtgaagaacatattctt 25025260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 31014968 - 31014924
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31014968 ggaaagttggattcaatgattagattaagtgaagaacatattctt 31014924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 37374003 - 37374051
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37374003 catgggaaagttggattcaatgattaaattaagtgaagaacatattctt 37374051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 41875664 - 41875616
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41875664 catgggaaagttgggttcaatgattagattaagtgaagaacatattctt 41875616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 44868045 - 44868093
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44868045 catgggaaagttggattcaatgattagattaagtaaagaacatattctt 44868093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 47737721 - 47737673
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47737721 catgggaatgttggattcaatgattagattaagtgaagaacatattctt 47737673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 50687756 - 50687708
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50687756 catgggaaagtttgattcaatgattagattaagtgaagaacatattctt 50687708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 55282469 - 55282421
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55282469 catgggaaagttggatttaatgattagattaagtgaagaacatattctt 55282421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 49752312 - 49752359
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  49752312 atgggaaagtaggattcaatgattagattaagtgaagaacatattctt 49752359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 37374650 - 37374609
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37374650 ggaaagttggattcaatgattagattaagtgaagaacatatt 37374609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 49752958 - 49752913
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  49752958 catgggaaagttggattcaatgattagattaagtgaagaatatatt 49752913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 8427791 - 8427743
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||    
T  8427791 catgggaaagttagatttaatgattagattaagtgaagaacatattctt 8427743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 23584275 - 23584323
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||    
T  23584275 catgggaaagttcgattcaatgattagattaagtgaaaaacatattctt 23584323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 23599098 - 23599146
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||    
T  23599098 catgggaaagttcgattcaatgattagattaagtgaaaaacatattctt 23599146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 25025812 - 25025764
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||    
T  25025812 catgggaaagtttgattcaatgattagattaagagaagaacatattctt 25025764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 38575690 - 38575642
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  38575690 catggaaaagttggattcaatgattaaattaagtgaagaacatattctt 38575642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 44868666 - 44868618
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  44868666 catgggaaaatttgattcaatgattagattaagtgaagaacatattctt 44868618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 50675172 - 50675128
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  50675172 atgggaaagttgaattcaatgattagattaagtgaagaacatatt 50675128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 55281873 - 55281921
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  55281873 catgggaaaattggatttaatgattagattaagtgaagaacatattctt 55281921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 48218630 - 48218677
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  48218630 atggaaaagttggattcaatgattagattaagtgaataacatattctt 48218677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 19555959 - 19555923
Alignment:
Q  204 ggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||    
T  19555959 ggattcaatgattagattaagtgaagaacatattctt 19555923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 24220617 - 24220665
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  24220617 catggaaaaattggattcaatgatcagattaagtgaagaacatattctt 24220665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 40887981 - 40887941
Alignment:
Q  200 agttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  40887981 agttgtattcaatgattagattaagtgaagaacatattctt 40887941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 48219283 - 48219235
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  48219283 catgggaaaattggattcaatgattagattaagtgatgaatatattctt 48219235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 37375511 - 37375468
Alignment:
Q  197 gaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  37375511 gaaagttggattcgatgattagattaagtgaagaacatcttctt 37375468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 47737103 - 47737149
Alignment:
Q  194 tgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||    
T  47737103 tgggtaagttggattcaacgattagattaagtggagaacatattctt 47737149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 32672824 - 32672783
Alignment:
Q  199 aagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  32672824 aagttggatttaatgattagattaagcgaagaacatattctt 32672783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 24221216 - 24221172
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||    
T  24221216 ggaaagttggatttaatgattatattaagtgaagaacacattctt 24221172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 43103941 - 43103985
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||    
T  43103941 ggaaagttggattcaacgattggattaagtgaataacatattctt 43103985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 43658294 - 43658332
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaac 232  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  43658294 atgggaaagttg-attcaatgattagattaagtgaagaac 43658332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 8427269 - 8427302
Alignment:
Q  207 ttcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||| ||||||||||||||||    
T  8427269 ttcaatgattagattaaatgaagaacatattctt 8427302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 50687145 - 50687182
Alignment:
Q  197 gaaagttggattcaatgattagattaagtgaagaacat 234  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  50687145 gaaagttggattcaataattagattaagtgaataacat 50687182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 48844013 - 48843962
Alignment:
Q  189 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48844013 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 48843962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 1403078 - 1403126
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403078 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 1403126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 49533784 - 49533829
Alignment:
Q  195 gggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49533784 gggaaagttggattcaatgattagattaagtgaagaacatattctt 49533829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 42839596 - 42839548
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42839596 catgggaaagttgaattcaatgattagattaagtgaagaacatattctt 42839548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 43368883 - 43368835
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43368883 catgggaaagttgtattcaatgattagattaagtgaagaacatattctt 43368835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 52859836 - 52859788
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52859836 catgggaaagttgaattcaatgattagattaagtgaagaacatattctt 52859788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 27817052 - 27817006
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattc 238  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  27817052 catggaaaagttggattcaatgattagattaagtgaagaacatattc 27817006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 6288245 - 6288204
Alignment:
Q  199 aagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6288245 aagttggattcaatgattagattaagtgaagaacatattctt 6288204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 1403735 - 1403688
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1403735 catgggaaagttg-attcaatgattagattaagtgaagaacatattctt 1403688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 7219695 - 7219648
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7219695 catgggaaa-ttggattcaatgattagattaagtgaagaacatattctt 7219648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 7782739 - 7782691
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  7782739 catgggaaagttggattcaatgattggatcaagtgaagaacatattctt 7782691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 8560194 - 8560242
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  8560194 catgggaatgttggattcaaagattagattaagtgaagaacatattctt 8560242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 27797155 - 27797203
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  27797155 catgggaaggttgaattcaatgattagattaagtgaagaacatattctt 27797203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 42838975 - 42839023
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||    
T  42838975 catgggaaagttagagtcaatgattagattaagtgaagaacatattctt 42839023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 42840360 - 42840316
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  42840360 atgggaaagttgaattcaatgattagattaagtgaagaacatatt 42840316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 48369524 - 48369568
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  48369524 ggaaagttggattcaatgattggattaagtgaagaacatattctt 48369568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 27797783 - 27797736
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  27797783 atgggaaagttagagtcaatgattagattaagtgaagaacatattctt 27797736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 51247863 - 51247914
Alignment:
Q  189 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  51247863 tcacatggaaaaattggattcaatgattagattaagtgaagaatatattctt 51247914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 7219048 - 7219094
Alignment:
Q  194 tgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  7219048 tgggaaagttggattcaatgattagattaaatgaagaatatattctt 7219094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 37725423 - 37725465
Alignment:
Q  198 aaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  37725423 aaagttggattcaatcattagattaagtgaagaacatattctt 37725465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 27934343 - 27934295
Alignment:
Q  191 acatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  27934343 acatgggaaagttggat-caatgattagattaagagaagaacatattctt 27934295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 41563833 - 41563792
Alignment:
Q  199 aagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  41563833 aagttggattcaattattagattaagtgaagaacatattctt 41563792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 8560790 - 8560743
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  8560790 catggaaaagttg-attcaatgattagattaagtgaagaacatattctt 8560743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 41563217 - 41563265
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  41563217 catgggaaagttggattcaattattagattaaatgaagaacgtattctt 41563265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 42839739 - 42839787
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| || |||||||| ||||||||||||||||||||||||    
T  42839739 catgggaaagttagagtcaatgatcagattaagtgaagaacatattctt 42839787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 43368228 - 43368276
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  43368228 catgggaatgttagattcaatgattaaattaagtgaagaacatattctt 43368276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 48843622 - 48843666
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||| |||||||||| |||||||||||    
T  48843622 ggaaagttggattcaatgattatattaagtgaataacatattctt 48843666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 49534444 - 49534396
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||    
T  49534444 catggaaaagttggattcaatgattagattaagttaaaaacatattctt 49534396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 51248531 - 51248483
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||| |||||||| |||||||||||||||||||||||||||    
T  51248531 catggaaaagtttgattcaataattagattaagtgaagaacatattctt 51248483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 52859184 - 52859235
Alignment:
Q  189 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| |||||||||| ||||||||||||||||||| |||| |||||||||||    
T  52859184 tcacgtgggaaagttagattcaatgattagattaaatgaataacatattctt 52859235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 6287672 - 6287706
Alignment:
Q  206 attcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||    
T  6287672 attcaatgattagattaagtgaagaacatattctt 6287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 37725713 - 37725672
Alignment:
Q  197 gaaagttggattcaatgattagattaagtgaagaacatattc 238  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  37725713 gaaaattggattcaatgattagattaagtgaagaatatattc 37725672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 15281 - 15233
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15281 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 15233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 11303 - 11351
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11303 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 11351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 3957538 - 3957586
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957538 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 3957586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 42408616 - 42408565
Alignment:
Q  189 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42408616 tcacatggaaaagttggattcaatgattagattaagtgaagaacatattctt 42408565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 5324451 - 5324403
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5324451 catgagaaagttggattcaatgattagattaagtgaagaacatattctt 5324403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 8813731 - 8813683
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8813731 catgggaaagttggattcaatgattagattaagtaaagaacatattctt 8813683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 26687538 - 26687586
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26687538 catgggaaagttagattcaatgattagattaagtgaagaacatattctt 26687586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 26957269 - 26957317
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26957269 catgggaaagttagattcaatgattagattaagtgaagaacatattctt 26957317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 33430084 - 33430128
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33430084 ggaaagttggattcaatgattagattaagtgaagaacatattctt 33430128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 3739035 - 3739086
Alignment:
Q  189 tcacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  3739035 tcacatgggaaagttggattcaatgattagattaagtgaaaaatatattctt 3739086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 3739706 - 3739663
Alignment:
Q  197 gaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3739706 gaaagttggattcaatgattagattaagtgaagaacatattctt 3739663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 13738099 - 13738146
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  13738099 atgggaaagttggattcaatgattggattaagtgaagaacatattctt 13738146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 4929554 - 4929509
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  4929554 catgggaaagttggattcaatgattagattaagtgaagaatatatt 4929509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 28076017 - 28075969
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||    
T  28076017 catgggaaagttggattcaatgattagattaagtgaaaaatatattctt 28075969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 21770045 - 21770084
Alignment:
Q  201 gttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21770045 gttggattcaatgattagattaagtgaagaacatattctt 21770084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 42408031 - 42408078
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  42408031 atgggaaaattggattcaatgattagattaaatgaagaacatattctt 42408078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 4928915 - 4928957
Alignment:
Q  198 aaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  4928915 aaagttggatttaatgattagattaagtgaagaacatattctt 4928957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 3958178 - 3958137
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  3958178 ggaaagtttgattcaataattagattaagtgaagaacatatt 3958137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 26688092 - 26688057
Alignment:
Q  205 gattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26688092 gattcaatgattatattaagtgaagaacatattctt 26688057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 26957823 - 26957788
Alignment:
Q  205 gattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26957823 gattcaatgattatattaagtgaagaacatattctt 26957788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 199274 - 199226
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  199274 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 12640003 - 12640051
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12640003 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 12640051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 20075563 - 20075611
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20075563 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 20075611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 25370440 - 25370392
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25370440 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 25370392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 26424452 - 26424404
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26424452 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 26424404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 32291053 - 32291101
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32291053 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 32291101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 36945271 - 36945223
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36945271 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 36945223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 48091143 - 48091095
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091143 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 48091095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 55816498 - 55816450
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55816498 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 55816450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 25369822 - 25369869
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25369822 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 25369869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 55815864 - 55815911
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55815864 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 55815911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 48782122 - 48782077
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48782122 catgggaaagttggattcaatgattagattaagtgaagaacatatt 48782077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 2713891 - 2713843
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2713891 catggaaaagttggattcaatgattagattaagtgaagaacatattctt 2713843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 20422779 - 20422731
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20422779 catggaaaagttggattcaatgattagattaagtgaagaacatattctt 20422731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 29809135 - 29809087
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29809135 catgggaaagttgaattcaatgattagattaagtgaagaacatattctt 29809087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 31876826 - 31876874
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31876826 catggaaaagttggattcaatgattagattaagtgaagaacatattctt 31876874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 32901889 - 32901937
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32901889 catgggaaagttggattcaatgattagattaagtaaagaacatattctt 32901937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 32902513 - 32902465
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32902513 catgggaaagttgaattcaatgattagattaagtgaagaacatattctt 32902465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 36944648 - 36944696
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36944648 catggaaaagttggattcaatgattagattaagtgaagaacatattctt 36944696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 37567522 - 37567474
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37567522 catgggaaagttggattcaatgattagattaagtaaagaacatattctt 37567474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 40847715 - 40847763
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40847715 catgagaaagttggattcaatgattagattaagtgaagaacatattctt 40847763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 52597528 - 52597576
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52597528 catgggaaagttagattcaatgattagattaagtgaagaacatattctt 52597576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 52597755 - 52597711
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52597755 ggaaagttggattcaatgattagattaagtgaagaacatattctt 52597711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 20076229 - 20076186
Alignment:
Q  197 gaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20076229 gaaagttggattcaatgattagattaagtgaagaacatattctt 20076186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 28223606 - 28223649
Alignment:
Q  197 gaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28223606 gaaagttggattcaatgattagattaagtgaagaacatattctt 28223649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 40848177 - 40848130
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40848177 atgggaaagtttgattcaatgattagattaagtgaagaacatattctt 40848130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 48090504 - 48090551
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattct 239  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48090504 catgggaaagttggattcaatgattagattaagtgtagaacatattct 48090551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 388791 - 388836
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  388791 catgggaaagttggattcaatgattagattaagtgaaaaacatatt 388836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 12640634 - 12640589
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  12640634 catgggaaagttggattcaatgattagattaagcgaagaacatatt 12640589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 26423803 - 26423844
Alignment:
Q  198 aaagttggattcaatgattagattaagtgaagaacatattct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26423803 aaagttggattcaatgattagattaagtgaagaacatattct 26423844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 199037 - 199085
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  199037 catgggaaagttaaattcaatgattagattaagtgaagaacatattctt 199085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 389453 - 389405
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  389453 catggaaaagttggattcagtgattagattaagtgaagaacatattctt 389405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 3708811 - 3708859
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  3708811 catgggaaagttggattcaatgattagattaagtaaagaacatactctt 3708859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 6862689 - 6862733
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  6862689 ggaaagttggattcaaagattagattaagtgaagaacatattctt 6862733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 31877479 - 31877435
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  31877479 atgggaaagttggatttaatgattagattaagtgaagaacatatt 31877435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 35427284 - 35427331
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35427284 catgggaaa-ttggattcaatgattagattaagtgaagaacatattctt 35427331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 36111264 - 36111217
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36111264 catgggaaa-ttggattcaatgattagattaagtgaagaacatattctt 36111217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 40345177 - 40345133
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  40345177 atgggaaagttagattcaatgattagattaagtgaagaacatatt 40345133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 33569758 - 33569805
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattct 239  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  33569758 catggaaaagttggattcaataattagattaagtgaagaacatattct 33569805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 31842770 - 31842726
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  31842770 catgggaaagt-ggattcaatgattagattaagtgaagaacatatt 31842726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 40344541 - 40344589
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  40344541 catgagaaagttggattaaattattagattaagtgaagaacatattctt 40344589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 37566939 - 37566989
Alignment:
Q  190 cacatgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||| |||| || ||||||||||||| ||||||||||||||||||||||    
T  37566939 cacatgagaaaattagattcaatgattaaattaagtgaagaacatattctt 37566989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 47328443 - 47328397
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattct 239  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||    
T  47328443 atggaaaagttagattcaataattagattaagtgaagaacatattct 47328397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 48781526 - 48781568
Alignment:
Q  198 aaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||| ||| ||||||||    
T  48781526 aaagttggattcaatgattagattaagtgatgaatatattctt 48781568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 47321798 - 47321836
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaa 231  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  47321798 atggaaaagttggatttaatgattagattaagtgaagaa 47321836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 35428237 - 35428208
Alignment:
Q  193 atgggaaagttggattcaatgattagatta 222  Q
    ||||||||||||||||||||||||||||||    
T  35428237 atgggaaagttggattcaatgattagatta 35428208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 20422169 - 20422205
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaa 228  Q
    |||||||||| | ||||||||||||||||||||||||    
T  20422169 catgggaaaggtagattcaatgattagattaagtgaa 20422205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 4387008 - 4386960
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4387008 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 4386960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 7716709 - 7716757
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7716709 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 7716757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 9224304 - 9224352
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9224304 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 9224352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 28224436 - 28224388
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28224436 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 28224388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 39477373 - 39477325
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39477373 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 39477325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 6849326 - 6849371
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6849326 catgggaaagttggattcaatgattagattaagtgaagaacatatt 6849371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 6849590 - 6849545
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6849590 catgggaaagttggattcaatgattagattaagtgaagaacatatt 6849545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 467143 - 467191
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  467143 catgggaaagttggattcaatgattaaattaagtgaagaacatattctt 467191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 3595284 - 3595332
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3595284 catgggaaagttggattcaatgattagataaagtgaagaacatattctt 3595332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 10883325 - 10883373
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10883325 catgggaaagttggattcaatgattagattaagtaaagaacatattctt 10883373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 11256154 - 11256202
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11256154 catggtaaagttggattcaatgattagattaagtgaagaacatattctt 11256202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 16571156 - 16571204
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16571156 catgggaaagttggattcaatgattagattaagtgaaaaacatattctt 16571204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 16887621 - 16887669
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16887621 catgggatagttggattcaatgattagattaagtgaagaacatattctt 16887669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 20243591 - 20243639
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20243591 catgggaaagttggattcaatgattagattaagtgaagaatatattctt 20243639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 20244219 - 20244171
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20244219 catggaaaagttggattcaatgattagattaagtgaagaacatattctt 20244171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 28223830 - 28223874
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28223830 ggaaagttggattcaatgattagattaagtgaagaacatattctt 28223874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 30161971 - 30162019
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30161971 catggaaaagttggattcaatgattagattaagtgaagaacatattctt 30162019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 40165911 - 40165959
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40165911 catgggaaagttggattcaatgattggattaagtgaagaacatattctt 40165959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 7583840 - 7583793
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  7583840 atgggaaagttggattcaatgattagcttaagtgaagaacatattctt 7583793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 8963542 - 8963587
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  8963542 catgggaaagttggattcaatgattagattaagtgaaaaacatatt 8963587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 3595943 - 3595895
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  3595943 catggaaaagttggattcaatgattagattaagtgaaaaacatattctt 3595895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 8113348 - 8113300
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||    
T  8113348 catgggaaagttggattcgatgattagattatgtgaagaacatattctt 8113300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 11256788 - 11256740
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  11256788 catgagaaagttggattcaatgattagattaagtgaagaatatattctt 11256740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 16571774 - 16571726
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  16571774 catgggaaaattggattcaatgattagatcaagtgaagaacatattctt 16571726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 16903137 - 16903092
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||    
T  16903137 catgagaaagttggattcaatgattagattaagtgaataacatatt 16903092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 40166891 - 40166846
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||    
T  40166891 catgggaaaattggattcaatgattagattaagtcaagaacatatt 40166846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 7583170 - 7583218
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  7583170 catgagaaaattggattcaatgattagattaggtgaagaacatattctt 7583218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 7717332 - 7717285
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  7717332 catgggaaagttg-attcaatgattatattaagtgaagaacatattctt 7717285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 8112718 - 8112754
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaa 228  Q
    |||||||||||||||||||||||||||||||||||||    
T  8112718 catgggaaagttggattcaatgattagattaagtgaa 8112754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 33847911 - 33847959
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||| |||||||||  |||||||||||||||||||||||||||    
T  33847911 catgggaaagatggattcaacaattagattaagtgaagaacatattctt 33847959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 17918060 - 17918107
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  17918060 atggaaaagttagattcaatgattagattaagtgaagaatatattctt 17918107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 39476554 - 39476601
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||||    
T  39476554 atgggaaagtttaattcaatgattagattaagtgaagaatatattctt 39476601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 17918720 - 17918685
Alignment:
Q  205 gattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| |||||||||||||||||||||||||||    
T  17918720 gattcaattattagattaagtgaagaacatattctt 17918685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 467383 - 467341
Alignment:
Q  198 aaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||| ||||||| |||| ||||||||||||||||||||||    
T  467383 aaagttgaattcaataattaaattaagtgaagaacatattctt 467341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 6032197 - 6032244
Alignment:
Q  193 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6032197 atgggaaagttggattcaatgattagattaagtgaagaacatattctt 6032244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 12809748 - 12809702
Alignment:
Q  194 tgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12809748 tgggaaagttggattcaatgattagattaagtgaagaacatattctt 12809702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 5523242 - 5523286
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5523242 ggaaagttggattcaatgattagattaagtgaagaacatattctt 5523286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 30610749 - 30610797
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30610749 catgggaaaattggattcaatgattagattaagtgaagaacatattctt 30610797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 30611393 - 30611345
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30611393 catgggaaagttggattcaatgattagattaactgaagaacatattctt 30611345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 33668259 - 33668307
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33668259 catgggaaagttggattcaatgattaaattaagtgaagaacatattctt 33668307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 5523890 - 5523846
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  5523890 ggaaagtttgattcaatgattagattaagtgaagaacatattctt 5523846  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 6032801 - 6032753
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  6032801 catgagaaagttagattcaatgattagattaagtgaagaacatattctt 6032753  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 12809111 - 12809155
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  12809111 ggaaagttggatgcaatgattagattaagtgaagaacatattctt 12809155  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 13944328 - 13944376
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  13944328 catgggaaagttgaattcaatgattagattaaatgaagaacatattctt 13944376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 31723871 - 31723919
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  31723871 catgggaaatttggatttaatgattagattaagtgaagaacatattctt 31723919  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 31724510 - 31724448
Alignment:
Q  179 aggtgtgtgctcacatgggaaagttggattcaatga-ttagattaagtgaagaacatattctt 240  Q
    ||||||||| ||||| |||||||||||||||||||| || |||||||||||||| ||||||||    
T  31724510 aggtgtgtgttcacaagggaaagttggattcaatgattttgattaagtgaagaatatattctt 31724448  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 13936688 - 13936640
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| || |||||||||||||||||| ||||||||||||||    
T  13936688 catgggaaagttagagtcaatgattagattaagtaaagaacatattctt 13936640  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 33668872 - 33668833
Alignment:
Q  198 aaagttggattcaatgattagattaagtgaagaacatatt 237  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  33668872 aaagttggattcaatgattagattaagtgaagaatatatt 33668833  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 33648207 - 33648163
Alignment:
Q  196 ggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| |||||||||||||||  ||||||||||||| ||||||||    
T  33648207 ggaaaattggattcaatgattgaattaagtgaagaatatattctt 33648163  T

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Target: scaffold1095 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 1523 - 1571
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  1523 catggaaaagttggattcaatgattagattaagtgaataacatattctt 1571  T

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Target: scaffold0368 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 11832 - 11784
Alignment:
Q  192 catgggaaagttggattcaatgattagattaagtgaagaacatattctt 240  Q
    |||||||||||| || |||||||| ||||||||||||||||||||||||    
T  11832 catgggaaagttagagtcaatgatcagattaagtgaagaacatattctt 11784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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