View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_231 (Length: 249)
Name: NF8518A_low_231
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_231 |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 31160213 - 31160288
Alignment:
| Q |
172 |
caagaactttagtgactacccatttgaagatacattccaaaaaacaaaactttaactcaaaaataactaccttgga |
247 |
Q |
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| T |
31160213 |
caagaactttagtgactacccatttgaagatacattccaaaaaacaaaactttaactcaaatataactaccttgga |
31160288 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 31160056 - 31160096
Alignment:
| Q |
11 |
atgaatcaaacaacgccataagtcatatcgctcagtcatat |
51 |
Q |
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| T |
31160056 |
atgaatcaaacaacgtcataagtcataacgctcaatcatat |
31160096 |
T |
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