View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_234 (Length: 249)
Name: NF8518A_low_234
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_234 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 7947209 - 7947441
Alignment:
| Q |
1 |
atttcctctaaccctcgatttatggaagacttaaagataaagcctggtacatgcgggagcttcttttattaatgtgaagatnnnnnnngcatgcattaca |
100 |
Q |
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| T |
7947209 |
atttcctctaaccctcgatttatggaagacttaaagataaagcctggtacatgcgggagcttcttttattaatgtgaagagaaaaaaagcatgcattaca |
7947308 |
T |
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| Q |
101 |
tgatgtatctcatattttgaattaatcaacaatctttattttgaaataatctattgtatttcttagatatccaacaagattataataaatgttccatgga |
200 |
Q |
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| T |
7947309 |
tgatgtatctcatattttgaataaatcaacaatctttattttgaaagaatctattgtatttcttagatatccaacaagattataataaatgttccatgga |
7947408 |
T |
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| Q |
201 |
ccctgtgtagttactacatctttattttcaaaa |
233 |
Q |
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| T |
7947409 |
ccctgtgtagttactacatctttattttcaaaa |
7947441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7941658 - 7941723
Alignment:
| Q |
1 |
atttcctctaaccctcgatttatggaagacttaaagataaagcctggtacatgcgggagcttcttt |
66 |
Q |
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| T |
7941658 |
atttcctctaaccctcaatttataaaagacttaaagatgaggcctgatacttgccggagctccttt |
7941723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 6785685 - 6785631
Alignment:
| Q |
144 |
aaataatctattgtatttcttagatatccaacaagattataataaatgttccatg |
198 |
Q |
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| T |
6785685 |
aaataaacaattggatttcttagatatccaacatgattaaaataaatgttgcatg |
6785631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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