View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_235 (Length: 248)
Name: NF8518A_low_235
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_235 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 2448656 - 2448895
Alignment:
| Q |
9 |
atcagagagataaattgtgcatagaagcttgatgtttacatgttagagtattgtgacatacctaatgccatgagtcccaggtccgcatgtaacttgagtg |
108 |
Q |
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| T |
2448656 |
atcagagagataaattatgcatagaagcttgatgtttacatgttagagtattttgacatacctaatgccatgagtcccaggtccacatgtaacttgagtg |
2448755 |
T |
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| Q |
109 |
acattgatgaattgtgacccacctttaatagcaatgcaatcatcgcctatatcgtaaaattcatgagtaaacaaagattgaaatccttaaatcaatattt |
208 |
Q |
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| T |
2448756 |
acattgatgaattgtgacccacctttaatagcaatgcaatcatcgcctatatcgtaaaattcatgagtaaacaaagattgaaatccttaaatcaatattt |
2448855 |
T |
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| Q |
209 |
aaaagaaataacatgctaacaatctggagctagatgtaag |
248 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
2448856 |
aaaagaaataacatgctaacaatctggagatagatgtaag |
2448895 |
T |
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