View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_237 (Length: 248)
Name: NF8518A_low_237
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_237 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 30411012 - 30411230
Alignment:
| Q |
9 |
atcagagaacagtgctaatgatgatgaacaagcagtcctgcaacaagatatctagttcttaaaagagtcatggtccaaccttgttgagatggagccaatg |
108 |
Q |
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| T |
30411012 |
atcagaaaacagtgctaatgatgatgatcaagcagtcctgcaacaagatatctagttcttaaaagagtcatggtccaaccttgttgagatgaagccaatg |
30411111 |
T |
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| Q |
109 |
atggtgaccttgaacaagatctcaatgctgtcaagtaacaggtcaggaggtaaatacagctagaaacttgattggtaagttacctgcagaaacatctttt |
208 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30411112 |
atggtgactttgaacaagatctcaatgctgtcaa--tacaggtcaggaggcaaatacatctagaaacttgattggtaagttacctgcagaaacatctttg |
30411209 |
T |
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| Q |
209 |
tccaaagaagcagatgctctt |
229 |
Q |
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||||||||||||||||||||| |
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| T |
30411210 |
tccaaagaagcagatgctctt |
30411230 |
T |
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