View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_238 (Length: 248)
Name: NF8518A_low_238
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_238 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 18219130 - 18219339
Alignment:
| Q |
9 |
cataaaggtccctcttggtttgcaaatttggaaaccacttttcagcctttctatctttgctgctttgtcctctgctgctctgcttcctactaccatttgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18219130 |
cataaaggtccctcttggtttgcaaatttggaaaccacttttcagcctttctatctttgctgctttgtcctctgctgctctgcttcctactaccatttgt |
18219229 |
T |
|
| Q |
109 |
gtgtcttctgattttgnnnnnnngacattattacctttctcttcctcccttgtctcttgtccaatgctttctgtcaatgatgttggtcctagcaataacg |
208 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
18219230 |
gtgtctgctgattttgtttttttgacattattacctttctcttc---------------tccaatgttttctgtcaatgatgttggtccaagcaataaca |
18219314 |
T |
|
| Q |
209 |
ctggtggtgttaatgattctgacat |
233 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18219315 |
ctggtggtgttaatgattctgacat |
18219339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 43011096 - 43011226
Alignment:
| Q |
86 |
ctctgcttcctactaccatttgtgtgtcttctgattttgnnnnnnngacattattacctttctcttcctcccttgtctcttgtccaatgctttctgtcaa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
43011096 |
ctctgcttcctactaccatttgtgtgtctgctgattttgttttgttcacgttagtacctttctcttcctcccttgtctcatgtccaatgttttctgtcaa |
43011195 |
T |
|
| Q |
186 |
tgatgttggtcctagcaataacgctggtggt |
216 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |
|
|
| T |
43011196 |
tgatgttggtccaagcaatgacgctggtggt |
43011226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University