View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_239 (Length: 247)
Name: NF8518A_low_239
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_239 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 34142469 - 34142223
Alignment:
| Q |
1 |
actatctcctgtgaggtgctcactcataatgactattaaattaaccgtccctctttgagcttgtttatacattattatatagtttatacaattaattgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142469 |
actatctcctgtgaggtgctcactcataatgactattaaattaaccgtccctctttgagcttgtttatacattattatatagtttatacaattaattgat |
34142370 |
T |
|
| Q |
101 |
tttgcctcacaaactgggtttttggtagcaagattatggttgcaaatgagtagagctagttcaatgatttttgaatgcttgttattttccatctgatcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142369 |
tttgcctcacaaactgggtttttggtagcaagattatggttgcaaatgcgtagagctagttcaatgatttttgaatgcttgttattttccatctgatcaa |
34142270 |
T |
|
| Q |
201 |
atgctaagttgctaacatgttttgcatattgatatttgtggttttca |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142269 |
atgctaagttgctaacatgttttgcatattgatatttgtggttttca |
34142223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University