View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_24 (Length: 442)
Name: NF8518A_low_24
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 6 - 436
Target Start/End: Complemental strand, 34144867 - 34144437
Alignment:
| Q |
6 |
aagaacatgcatgttacagatcttcttgcaaaatgtgaatctatttttgagtttgtatttatgatgatgctgcatatttttaacatctttttaaactgac |
105 |
Q |
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| T |
34144867 |
aagaacatgcatgttacagatcttcttgcaaaatgtgaatctgtttttgagtttgtatttatgatgatgctgcatatttttaacatctttttaaactgac |
34144768 |
T |
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| Q |
106 |
tgcaggatcttccttctaagttaaatcctactatgtcattgttggttgatcagaaaatcaatctcgaggattcaaccggtaagagatgggttataacaat |
205 |
Q |
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| T |
34144767 |
tgcaggatcttccttctaagttaaatcctactatgtcattgttggttgatcagaaaatcaatcttgaggattcaaccggtaagagatgggctataacagt |
34144668 |
T |
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| Q |
206 |
ttcagaagttgatggttcttttgcttttaagaaaggatggggtgatttctcatcggctcacaagcttgaaattggagatttgcttgtattcaactgcatt |
305 |
Q |
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| T |
34144667 |
atcagaagttgatggttcttttgcttttaagaaaggatgggatgatttctcatcggctcacaagcttgaaattggagatttgcttgtattcaactgcatt |
34144568 |
T |
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| Q |
306 |
aacaagtataaatttgatgtcaagatctatgaccagtctatgtgtgaaaggattgatttttctgataaaagaaagaggaaaaagagaagtagatgcagca |
405 |
Q |
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| T |
34144567 |
aacaagtataactttgatgtcaagatctatgaccagtctatgtgtgaaaggattgatttttctgacaaaagaaagaggaaaaagagaagtagatgcagca |
34144468 |
T |
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| Q |
406 |
gtggctcacttgatgcaggaggaacaccaaa |
436 |
Q |
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| T |
34144467 |
gtggctcacttgatgcaggaggaacaccaaa |
34144437 |
T |
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