View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_243 (Length: 247)
Name: NF8518A_low_243
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_243 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 10156503 - 10156730
Alignment:
| Q |
11 |
caatattagcttataaaaatggtaaatagaatagacaaaaagcctcaaccaaatttctttattcaaagacattttgaaaacaaaatgcaacaaattttaa |
110 |
Q |
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| T |
10156503 |
caatattagcttataaaaatggtaaatagaataaa-aaaaagcctcaaccatatttctttattcaaagacattttgaaaacaaaatgcaacaaattttaa |
10156601 |
T |
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| Q |
111 |
cttcaagtaatgacataaaatataaaaatctcaaaacatcccgaagatgtcgtccacaaggcaacatcaccggcctgggtttgcaatcaagctgcagggg |
210 |
Q |
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| T |
10156602 |
cttcaagtaatgacagaatat---aaaatctcaaaacatcccgaatatgtcgcccacaaggcaacatca-ctgtctgggtttgcgatcaagctgcagggg |
10156697 |
T |
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| Q |
211 |
-aaaatcccgcaagcccaaacccgtggaaaagg |
242 |
Q |
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|||| |||||||||||||||| |||||||||| |
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| T |
10156698 |
aaaaaacccgcaagcccaaacctgtggaaaagg |
10156730 |
T |
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