View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_244 (Length: 247)
Name: NF8518A_low_244
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_244 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 1841564 - 1841338
Alignment:
| Q |
9 |
aacaatatcaaccacaagaacaagaacaagaacaaggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttga |
108 |
Q |
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| T |
1841564 |
aacaacatcaaccacaagaacaagaacaagaacatggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttga |
1841465 |
T |
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| Q |
109 |
taattcaactatgataccagctacacctaattataagaataataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaaataga |
208 |
Q |
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| T |
1841464 |
taattcaactatgataccagctacacctaattataaga---ataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaaatgga |
1841368 |
T |
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| Q |
209 |
gtgaagagaggtagaagcagttcacagtgt |
238 |
Q |
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| T |
1841367 |
gtgaagagaggtagaagcagttcacagtgt |
1841338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 1824264 - 1824138
Alignment:
| Q |
9 |
aacaatatcaaccacaagaacaagaacaagaacaaggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttga |
108 |
Q |
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||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
1824264 |
aacaacatcaaccacaagaacaagaacaacaacatggtttgaaatcgaaaaaggttcctcgtaaaagttcttctccaaagacatatattttgtcttttga |
1824165 |
T |
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| Q |
109 |
taattcaactatgataccagctacacc |
135 |
Q |
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| T |
1824164 |
taattcaactatgataccagctacacc |
1824138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 1824109 - 1824021
Alignment:
| Q |
149 |
aataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaa---atagagtgaagagaggtagaagcagttcaca |
234 |
Q |
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||||||||||||| |||||||| |||||| |||| |||||| |||||||||| || ||||||||| |||||||||||||||||| |
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| T |
1824109 |
aataaacgtagccgtgaaagtactcaaaaagctgaagtgaaaactaatcaacaaatcaatggagtgaagaaaggtagaagcagttcaca |
1824021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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