View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_257 (Length: 244)
Name: NF8518A_low_257
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_257 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 22576593 - 22576717
Alignment:
| Q |
1 |
ttggattaacataggaaaatcttacagaagataatgtatatgttttgggaacttaattagtccttgcacaacggaaacaaatgaataccaatcatggctt |
100 |
Q |
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| T |
22576593 |
ttggattaacataggaaaatcttacagaagataatgtatatgttttgggaacttaattagtccttgcacaacagaaacaaatgaataccaatcatggctt |
22576692 |
T |
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| Q |
101 |
aagacagggcatacacatgcccata |
125 |
Q |
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| T |
22576693 |
aagacagggcatacacatgcccata |
22576717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Original strand, 22576786 - 22576816
Alignment:
| Q |
194 |
atgcaattatgcatgggtaggatgtagcaat |
224 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
22576786 |
atgcaattatgcatgggtaggatgtagcaat |
22576816 |
T |
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