View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_259 (Length: 244)
Name: NF8518A_low_259
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_259 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 36291132 - 36291354
Alignment:
| Q |
20 |
agcttttgcaggccttcttcatcggataatatggtgccacagtttgcaatcaagaaggatgtcactgaagtaatattttttagagcacttatttttgtac |
119 |
Q |
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| T |
36291132 |
agcttttgcaggccttcttcatcggataatatggtgccacagtttgcaatcaagaaggatgtcactgaagtaatattttttagagcacttatttttgtac |
36291231 |
T |
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| Q |
120 |
acacttcattttctttatttcatgcactccttctacacattattttctttctatttatctcttcctatcatatcataatattttcatattcatcacttca |
219 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |
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| T |
36291232 |
acacttcattttctttatttcatgcgctcgttctacacattattttctttctatttatctcttcctatcacatcataatatttttatatttatcacttca |
36291331 |
T |
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| Q |
220 |
ctctatttatttctttctgtcta |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
36291332 |
ctctatttatttctttctgtcta |
36291354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 36286075 - 36286153
Alignment:
| Q |
20 |
agcttttgcaggccttcttcatcggataatatggtgccacagtttgcaatcaagaaggatgtcactgaagtaatatttt |
98 |
Q |
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||||||||||||||||||||||| ||||| |||| |||||| | |||||||||||| |||||||||||||||||||||| |
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| T |
36286075 |
agcttttgcaggccttcttcatcagataacatggagccacaatgtgcaatcaagaaagatgtcactgaagtaatatttt |
36286153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 36280537 - 36280612
Alignment:
| Q |
23 |
ttttgcaggccttcttcatcggataatatggtgccacagtttgcaatcaagaaggatgtcactgaagtaatatttt |
98 |
Q |
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|||||||||| ||||||||| ||||| |||| || ||| |||||||||||||||||||||||| ||||| |||||| |
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| T |
36280537 |
ttttgcaggctttcttcatcagataacatggagcaacactttgcaatcaagaaggatgtcactcaagtattatttt |
36280612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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