View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_261 (Length: 243)

Name: NF8518A_low_261
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_261
NF8518A_low_261
[»] chr7 (13 HSPs)
chr7 (19-129)||(3651452-3651563)
chr7 (185-243)||(3679616-3679674)
chr7 (61-115)||(3702975-3703029)
chr7 (129-186)||(3653830-3653887)
chr7 (61-109)||(3694967-3695015)
chr7 (133-184)||(3651121-3651172)
chr7 (129-176)||(3675306-3675353)
chr7 (64-115)||(3705909-3705960)
chr7 (133-184)||(3706365-3706416)
chr7 (61-103)||(3685518-3685560)
chr7 (62-103)||(3693200-3693241)
chr7 (188-243)||(3703699-3703757)
chr7 (18-59)||(3700515-3700556)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 3651563 - 3651452
Alignment:
Q  19 catctttcaaccctaggtgatccccagtttggaagacatctaatgattaattgtagcaacagtttatgtaacttttaataatgtcccaaattctg-ttat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3651563 catctttcaaccctaggtgatccccagtttggaagacatctaatgattaattgtagcaacagtttatgtaacttttaataatgtcccaaattctgcttat 3651464  T
Q  118 ttcgagcagaag 129  Q
    ||||||| ||||    
T  3651463 ttcgagccgaag 3651452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 3679616 - 3679674
Alignment:
Q  185 ctgcaatagtcgaatcatattaaacttgagccaacaaatggattgaaggagataattta 243  Q
    ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  3679616 ctgcactagtcaaatcatattaaacttgagccaacaattggattgaaggagataattta 3679674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 3702975 - 3703029
Alignment:
Q  61 atgattaattgtagcaacagtttatgtaacttttaataatgtcccaaattctgtt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  3702975 atgattaattgtggcaacagtttatgtaacttttaataatgtctcaaattctgtt 3703029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 3653887 - 3653830
Alignment:
Q  129 gtaatagtacatagtctaagttacaaaaacaagcctccttcaactataacacactcct 186  Q
    |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  3653887 gtaatagtacatggtctaagttacaaaaacaagcttccatcaactataacacactcct 3653830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 3694967 - 3695015
Alignment:
Q  61 atgattaattgtagcaacagtttatgtaacttttaataatgtcccaaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3694967 atgattaattgtagcaacagtttatgtaacttttaataatgtctcaaat 3695015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 3651172 - 3651121
Alignment:
Q  133 tagtacatagtctaagttacaaaaacaagcctccttcaactataacacactc 184  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  3651172 tagtacatagtctaagttacaaaaacaagcctccatcgactataacacactc 3651121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 3675306 - 3675353
Alignment:
Q  129 gtaatagtacatagtctaagttacaaaaacaagcctccttcaactata 176  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3675306 gtaatagtacatagtctaagttagaaaaacaagcctccttcaactata 3675353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 3705909 - 3705960
Alignment:
Q  64 attaattgtagcaacagtttatgtaacttttaataatgtcccaaattctgtt 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  3705909 attaattgtagcaacagtttatgtaacttttaataatgtctcaacttctgtt 3705960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 3706365 - 3706416
Alignment:
Q  133 tagtacatagtctaagttacaaaaacaagcctccttcaactataacacactc 184  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  3706365 tagtacatagtctaagttacaaaaacaagcctccatcgactataacacactc 3706416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 3685518 - 3685560
Alignment:
Q  61 atgattaattgtagcaacagtttatgtaacttttaataatgtc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3685518 atgattaattgtagcaacagtttatgtaacttttaataatgtc 3685560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 3693200 - 3693241
Alignment:
Q  62 tgattaattgtagcaacagtttatgtaacttttaataatgtc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3693200 tgattaattgtagcaacagtttatgtaacttttaataatgtc 3693241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 3703699 - 3703757
Alignment:
Q  188 caatagtcgaatcatattaaacttgagcc---aacaaatggattgaaggagataattta 243  Q
    |||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||    
T  3703699 caatagtcgaatcatattaaacttgagccaataacaattggattgaaggagataattta 3703757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 3700515 - 3700556
Alignment:
Q  18 tcatctttcaaccctaggtgatccccagtttggaagacatct 59  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  3700515 tcatcttttaaccctaggtgatccccagtttggaagacatct 3700556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University