View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_262 (Length: 243)
Name: NF8518A_low_262
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_262 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 35489387 - 35489624
Alignment:
| Q |
6 |
cacagactgtaacaaaataaaattgactacatgaaaaatattatatcacatatcaattggtctatgccataggcattttcataaaaatacaatcaagcaa |
105 |
Q |
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| T |
35489387 |
cacaaactgtaacaaaataaaattgactacatgaaaaatattatatcacatatcaattggtctatgccataggcattttcataaaaatacaatcaagcaa |
35489486 |
T |
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| Q |
106 |
tagccttctggccatgatcaatgacaacattagaaacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtt |
205 |
Q |
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| T |
35489487 |
tagccttctggccatgatcaatgacaacattagaaacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtt |
35489586 |
T |
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| Q |
206 |
tgtctcaggaagaaacaaggcaacgaaaattgacatga |
243 |
Q |
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| T |
35489587 |
tgtctcaggaagaaacaaggcaacgaaaattgacatga |
35489624 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 14243099 - 14243022
Alignment:
| Q |
137 |
agaaacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcagg |
214 |
Q |
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| T |
14243099 |
agaaacatactttgtccaaaaccaatgcgacttccacaccctgttcatttcttcaattggaacatttttagtctcagg |
14243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 14233417 - 14233348
Alignment:
| Q |
145 |
actttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcagg |
214 |
Q |
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| T |
14233417 |
actttgtccaaaaccaatgcgacttccacaccctgttcatttcttcaattggaacatttttggtctcagg |
14233348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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