View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_263 (Length: 243)

Name: NF8518A_low_263
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_263
NF8518A_low_263
[»] chr6 (8 HSPs)
chr6 (20-226)||(33187175-33187382)
chr6 (90-181)||(10067684-10067775)
chr6 (72-121)||(20565795-20565844)
chr6 (33-143)||(9307229-9307335)
chr6 (90-181)||(33551048-33551139)
chr6 (90-124)||(19264742-19264776)
chr6 (99-143)||(28748036-28748080)
chr6 (72-160)||(33806684-33806772)
[»] chr4 (10 HSPs)
chr4 (99-181)||(51234426-51234508)
chr4 (72-181)||(8170924-8171033)
chr4 (75-222)||(52700913-52701060)
chr4 (77-143)||(38080937-38081003)
chr4 (79-143)||(4215168-4215232)
chr4 (79-121)||(46804796-46804838)
chr4 (90-187)||(8755921-8756018)
chr4 (72-181)||(17381513-17381622)
chr4 (72-124)||(27298561-27298613)
chr4 (91-183)||(37197545-37197637)
[»] chr2 (11 HSPs)
chr2 (72-177)||(19206469-19206574)
chr2 (90-181)||(12676433-12676524)
chr2 (72-143)||(40124298-40124369)
chr2 (72-183)||(18903130-18903241)
chr2 (72-183)||(23359377-23359489)
chr2 (92-142)||(14441108-14441158)
chr2 (90-172)||(28834674-28834756)
chr2 (80-121)||(1517582-1517623)
chr2 (72-121)||(6788509-6788558)
chr2 (84-136)||(39095105-39095157)
chr2 (76-124)||(42657786-42657834)
[»] chr1 (11 HSPs)
chr1 (42-225)||(30519045-30519224)
chr1 (89-187)||(2473154-2473251)
chr1 (40-181)||(30050557-30050694)
chr1 (90-124)||(2261953-2261987)
chr1 (77-161)||(2262135-2262219)
chr1 (99-183)||(4214455-4214539)
chr1 (72-140)||(38445173-38445241)
chr1 (72-134)||(39162617-39162678)
chr1 (90-208)||(45679674-45679792)
chr1 (72-121)||(16192267-16192316)
chr1 (72-164)||(18894627-18894719)
[»] scaffold0003 (1 HSPs)
scaffold0003 (89-183)||(89060-89154)
[»] chr3 (10 HSPs)
chr3 (88-182)||(2096272-2096366)
chr3 (90-180)||(48048014-48048104)
chr3 (72-143)||(31198107-31198178)
chr3 (72-143)||(47944550-47944621)
chr3 (79-181)||(22235228-22235330)
chr3 (72-124)||(38989763-38989815)
chr3 (72-187)||(14984440-14984555)
chr3 (72-121)||(17573211-17573260)
chr3 (72-121)||(40619213-40619262)
chr3 (90-143)||(47944335-47944388)
[»] chr7 (13 HSPs)
chr7 (72-181)||(34703663-34703771)
chr7 (76-143)||(23441491-23441558)
chr7 (88-170)||(10228750-10228832)
chr7 (132-218)||(24352396-24352481)
chr7 (32-143)||(38838647-38838754)
chr7 (76-160)||(23474545-23474629)
chr7 (76-143)||(23457816-23457883)
chr7 (76-143)||(23532883-23532950)
chr7 (79-121)||(5358248-5358290)
chr7 (98-143)||(23533114-23533159)
chr7 (125-186)||(30990994-30991055)
chr7 (98-134)||(23474783-23474819)
chr7 (79-143)||(32996503-32996567)
[»] chr5 (9 HSPs)
chr5 (71-164)||(23159062-23159155)
chr5 (90-181)||(3599847-3599938)
chr5 (71-181)||(917121-917231)
chr5 (75-121)||(9607139-9607185)
chr5 (73-143)||(22579505-22579575)
chr5 (79-181)||(26675045-26675147)
chr5 (79-181)||(26946653-26946755)
chr5 (34-143)||(7756407-7756512)
chr5 (90-183)||(9607361-9607454)
[»] chr8 (11 HSPs)
chr8 (74-181)||(21600438-21600545)
chr8 (72-181)||(2986914-2987022)
chr8 (80-160)||(21145619-21145699)
chr8 (131-183)||(30841094-30841146)
chr8 (88-143)||(28929526-28929581)
chr8 (90-225)||(41616693-41616828)
chr8 (99-181)||(44362617-44362699)
chr8 (81-142)||(7681012-7681073)
chr8 (79-172)||(10708583-10708676)
chr8 (72-121)||(21601941-21601990)
chr8 (72-124)||(33508452-33508502)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 33187382 - 33187175
Alignment:
Q  20 aaaaatttaagtggtaatgattattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  33187382 aaaaatttaagtggtaatgattattttggtctttgaatgtgtaacgatcggttagtcataatagttcataaatgtatcgaaatttcaaaatagtctctga 33187283  T
Q  120 ttatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatccgtataagtacttaattattgtt-atatcaatc 218  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33187282 ttatgaatttcgttaatcaaaatattatctcatgttaaatttttttgttaatactgtcatatcaatccgtataagtacttaattattgttaatatcaatc 33187183  T
Q  219 tctataag 226  Q
    ||||||||    
T  33187182 tctataag 33187175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 10067775 - 10067684
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 181  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||||||| | ||| |  |||||||  |||||||||| ||||||||    
T  10067775 aatgtatcgaaattttaaaatagtctctgattgtgtattttgttaatcaaaatagtctctgacattaaaatactttgttaatattgtcatat 10067684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 20565844 - 20565795
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  20565844 tagtcataatagtccatcaatgtatcgaatttttaaaatagtctctgatt 20565795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 9307229 - 9307335
Alignment:
Q  33 gtaatgattattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgt 132  Q
    |||||| |||||||| ||| ||||||||||| ||     |||| |||||||||  |||||||||| ||||||||||||||| | | |||||| | |||||    
T  9307229 gtaatggttattttgatctctgaatgtgtaataaa----tagtgataatagtctctaaatgtatcaaaattttaaaatagttttttattatgcacttcgt 9307324  T
Q  133 taatcaaaata 143  Q
    |||||||||||    
T  9307325 taatcaaaata 9307335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 33551139 - 33551048
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 181  Q
    |||||||| ||||||||||||| | ||||||| || ||||||||| |||||||| | ||| ||||| ||||||||  |||||| | ||||||    
T  33551139 aatgtatcaaaattttaaaatattatctgattgtgcatttcgttagtcaaaataatttctgatgttgaaatgtttctttaatattatcatat 33551048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 19264776 - 19264742
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatg 124  Q
    |||||||||||||||||||||||||||||||||||    
T  19264776 aatgtatcgaaattttaaaatagtctctgattatg 19264742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 28748080 - 28748036
Alignment:
Q  99 aaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||    
T  28748080 aaattttaaaatagtatctgattatgaattttgttagtcaaaata 28748036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 33806684 - 33806772
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaat 160  Q
    |||||| |||| ||| | |||||||||||||| ||||||||||  |||||||| | || |||| |||||||| | ||| | ||||||||    
T  33806684 tagtcacaataatcctttaatgtatcgaaattctaaaatagtcattgattatgtactttgttagtcaaaatagtctctaacgttaaaat 33806772  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 51234508 - 51234426
Alignment:
Q  99 aaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 181  Q
    ||||||||||||||||||| | |||| ||||||||| |||||||| | ||| ||||||||||||||| |||||| ||||||||    
T  51234508 aaattttaaaatagtctctaactatgcatttcgttagtcaaaatagtctctgatgttaaaatgttttattaatattgtcatat 51234426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 8171033 - 8170924
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 171  Q
    ||||||||||||||| | |||||||  |||||| |||||||||||||||| || | ||||||| |||||||| | ||| || |||||||||||  |||||    
T  8171033 tagtcataatagtccctcaatgtataaaaatttcaaaatagtctctgattttgcaattcgttagtcaaaataatctctaatattaaaatgtttcattaat 8170934  T
Q  172 actgtcatat 181  Q
    | ||||||||    
T  8170933 attgtcatat 8170924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 52701060 - 52700913
Alignment:
Q  75 tcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatact 174  Q
    |||||||| | | ||| |||||| ||||||||||||||||| || || || | ||| |||||||||||| | | ||||||||||||||||| |||||| |    
T  52701060 tcataataattcttaactgtatctaaattttaaaatagtctatgtttgtgcacttctttaatcaaaatagtctttcatgttaaaatgttttattaatatt 52700961  T
Q  175 gtcatatcaatccgtataagtacttaattattgttatatcaatctcta 222  Q
    |||||| || ||| |  |  ||| |||||||| | |||||||||||||    
T  52700960 gtcataacagtccttcaatatacataattattatcatatcaatctcta 52700913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 38081003 - 38080937
Alignment:
Q  77 ataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    |||||||||||| |||||||| |||||||||||||||||  ||||||| ||||||||| ||||||||    
T  38081003 ataatagtccatcaatgtatcaaaattttaaaatagtctacgattatgcatttcgttagtcaaaata 38080937  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 4215232 - 4215168
Alignment:
Q  79 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    |||||||| | |||| ||| |||||||||||||||||| |||| || | ||||||||||||||||    
T  4215232 aatagtccctcaatgaatcaaaattttaaaatagtctcggattgtgcacttcgttaatcaaaata 4215168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 46804796 - 46804838
Alignment:
Q  79 aatagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    |||||||| | |||||||| |||||||||||||||||||||||    
T  46804796 aatagtccctcaatgtatcaaaattttaaaatagtctctgatt 46804838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 8756018 - 8755921
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatcc 187  Q
    |||||| | ||||||||||||| ||  |||||||| | |||||||||||||||| | ||| |  |||||||  || ||||||| |||||||| |||||    
T  8756018 aatgtaacaaaattttaaaataatcattgattatgcacttcgttaatcaaaatagtctctaacattaaaatacttcgttaatattgtcatattaatcc 8755921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 17381622 - 17381513
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 171  Q
    |||||| |||||||| | |||||||| |||||  ||||||||| |||||| || | || ||||||||||||| |   | || ||||||| ||| ||||||    
T  17381622 tagtcacaatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaaatagtccttgatattaaaatatttcgttaat 17381523  T
Q  172 actgtcatat 181  Q
    | ||||||||    
T  17381522 attgtcatat 17381513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 27298561 - 27298613
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatg 124  Q
    |||| |||||||||| | |||||||| ||||||||||||||||| | ||||||    
T  27298561 tagttataatagtccgtgaatgtatcaaaattttaaaatagtctttaattatg 27298613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 37197637 - 37197545
Alignment:
Q  91 atgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 183  Q
    ||||||| || |||||||||||||  |||||  | ||||||||| |||||||| | | | || |||||||||||  |||||| ||||||||||    
T  37197637 atgtatcaaagttttaaaatagtccttgattgggcatttcgttagtcaaaatagtctttaatattaaaatgtttgattaatattgtcatatca 37197545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 19206574 - 19206469
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 171  Q
    ||||||| ||||||| | |||||||| ||||||||||||||| |||||||||| | || |||| |||||||||| ||| ||||||| |||| || |||||    
T  19206574 tagtcatgatagtcctttaatgtatcaaaattttaaaatagtttctgattatgcactttgttagtcaaaatattctctgatgttaagatgtattattaat 19206475  T
Q  172 actgtc 177  Q
    | ||||    
T  19206474 attgtc 19206469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 12676433 - 12676524
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 181  Q
    ||||||||||||| |||||||||||| ||||| || | || |||| |||||||| | ||| | ||||||||||||| |||||| ||||||||    
T  12676433 aatgtatcgaaatgttaaaatagtctatgattgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgtcatat 12676524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 40124298 - 40124369
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||||| || | | ||||| ||||||||    
T  40124298 tagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtcaaaata 40124369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 18903241 - 18903130
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 171  Q
    |||||| |||||||  | |||||||||||||| ||||||||| ||||||| || | |  ||||||||||||  | | | ||||||||||| | ||||||     
T  18903241 tagtcacaatagtcattcaatgtatcgaaattctaaaatagtttctgattgtgcactatgttaatcaaaatggtctttaatgttaaaatgctctgttaac 18903142  T
Q  172 actgtcatatca 183  Q
    ||||||||||||    
T  18903141 actgtcatatca 18903130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 23359377 - 23359489
Alignment:
Q  72 tagtcataatagtccataaat-gtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaa 170  Q
    |||||| |||||||| | ||| |||| |||||| ||| ||||||| ||||| || | | ||||| |||||||| | ||| | |||||||||||||||||     
T  23359377 tagtcacaatagtccttcaattgtattgaaattataatatagtctatgattgtgtactacgttagtcaaaatagtctctaacgttaaaatgttttgttac 23359476  T
Q  171 tactgtcatatca 183  Q
    || ||||||||||    
T  23359477 tattgtcatatca 23359489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 14441158 - 14441108
Alignment:
Q  92 tgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaat 142  Q
    |||||||||||||||||||||| | |||||||| |||  ||||||||||||    
T  14441158 tgtatcgaaattttaaaatagtatatgattatgcattatgttaatcaaaat 14441108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 28834674 - 28834756
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaata 172  Q
    |||||||| |||| ||||||||||||||||||||| | ||  | || ||||||| | ||||  |||||||||||| |||||||    
T  28834674 aatgtatcaaaatcttaaaatagtctctgattatgtactttatcaagcaaaataatctctcgcgttaaaatgtttcgttaata 28834756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 1517582 - 1517623
Alignment:
Q  80 atagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    ||||||| | |||||||||||||||||||||||||| |||||    
T  1517582 atagtccttcaatgtatcgaaattttaaaatagtctttgatt 1517623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 6788558 - 6788509
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    ||||||||||||||  | |||||||| ||||||||||||||| |||||||    
T  6788558 tagtcataatagtcattcaatgtatcaaaattttaaaatagtttctgatt 6788509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 39095105 - 39095157
Alignment:
Q  84 tccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaat 136  Q
    ||||| |||||||| ||||||||||||||| ||||||| || |||| ||||||    
T  39095105 tccatcaatgtatcaaaattttaaaatagtatctgattgtgcattttgttaat 39095157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 42657786 - 42657834
Alignment:
Q  76 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatg 124  Q
    ||||||||||||| |||||||  ||||||||||||| | ||||||||||    
T  42657786 cataatagtccattaatgtattaaaattttaaaataatatctgattatg 42657834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 30519045 - 30519224
Alignment:
Q  42 attttggtctttgaatgtgtaacaatcggttagtc-ataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaa 140  Q
    ||||||||| |||||||||||||||     ||||| | |||||||| ||||||||||||||||| |||||||||||||||| |  | ||  |   |||||    
T  30519045 attttggtccttgaatgtgtaacaaa----tagtccacaatagtccttaaatgtatcgaaatttcaaaatagtctctgattgtacactttatatgtcaaa 30519140  T
Q  141 atattatctcatgttaaaatgttttgttaatactgtcatatcaatccgtataagtacttaattattgttatatcaatctctataa 225  Q
    ||| | ||||  ||||||||||| ||||||||| |||||| |||||| |  |  |||||| ||| ||| ||||||||||||||||    
T  30519141 atagtctctcgcgttaaaatgttctgttaatacagtcataccaatccctcaatatacttactta-tgtcatatcaatctctataa 30519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 2473251 - 2473154
Alignment:
Q  89 aaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatcc 187  Q
    ||||||||| ||||| ||||||| ||||| |||||  | || ||||||| ||||| | |||| |||||||||||| |||||||||||| ||||||||||    
T  2473251 aaatgtatc-aaattataaaataatctctaattatccactttgttaatcgaaatagtctctcgtgttaaaatgttatgttaatactgttatatcaatcc 2473154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 30050694 - 30050557
Alignment:
Q  40 ttattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaa 139  Q
    |||||||||||||||||| |||||  ||    ||| || |||||||| | ||||||||||||||| |||||||||| |||||||| | || |||| ||||    
T  30050694 ttattttggtctttgaatttgtaatgat----tagccaaaatagtcccttaatgtatcgaaatttcaaaatagtctatgattatgcaatttgttagtcaa 30050599  T
Q  140 aatattatctcatgttaaaatgttttgttaatactgtcatat 181  Q
    |||| | |||||  ||||||| | | ||||||| || |||||    
T  30050598 aatagtctctcacattaaaatatctcgttaatattgacatat 30050557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 2261953 - 2261987
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatg 124  Q
    |||||||||||||||||||||||||||||||||||    
T  2261953 aatgtatcgaaattttaaaatagtctctgattatg 2261987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 2262219 - 2262135
Alignment:
Q  77 ataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatg 161  Q
    |||||||||| | ||||||| |||||||||||||||| ||| |||||| ||||  ||||| |||||| | | | |||||||||||    
T  2262219 ataatagtcctttaatgtattgaaattttaaaatagtatctaattatgcattttattaattaaaatagtctattatgttaaaatg 2262135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 4214539 - 4214455
Alignment:
Q  99 aaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 183  Q
    ||||||||||||||||   |||| | |||| ||||| |||||||| ||||| ||||| |||| || |||||||||| ||||||||    
T  4214539 aaattttaaaatagtccacgattttaaattacgttagtcaaaatagtatctgatgttcaaatattgtgttaatactatcatatca 4214455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 38445241 - 38445173
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaa 140  Q
    |||||| |||||||| | |||||||||||||| ||||||||||| ||||| || | ||| |||||||||    
T  38445241 tagtcacaatagtcctttaatgtatcgaaattctaaaatagtctttgattgtgcacttccttaatcaaa 38445173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 39162678 - 39162617
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgtta 134  Q
    |||||| |||||||| | ||||||||||||||||||||| |||| | |||||| |||||||||    
T  39162678 tagtcacaatagtccttcaatgtatcgaaattttaaaatggtct-taattatgcatttcgtta 39162617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 45679792 - 45679674
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatccgt 189  Q
    |||||||  |||||||||||||||   ||||| || | ||||||| |||||||| |  || |||||||||| |||| |||| | ||| ||||  |||| |    
T  45679792 aatgtataaaaattttaaaatagttcatgattgtgcaattcgttagtcaaaatagtccctaatgttaaaatattttattaaaattgttatattcatcctt 45679693  T
Q  190 ataagtacttaattattgt 208  Q
    ||||||||||| |||||||    
T  45679692 ataagtacttacttattgt 45679674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 16192316 - 16192267
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    ||||||||||| ||| | |||||||| ||||||||||||||| |||||||    
T  16192316 tagtcataatattccttcaatgtatcaaaattttaaaatagtttctgatt 16192267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 18894627 - 18894719
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttt 164  Q
    ||||||||||||||  | ||| ||||||||||||||| |||||  |||||||  | ||| |||||||||| | |  ||||||||||| |||||    
T  18894627 tagtcataatagtctttgaatatatcgaaattttaaagtagtcgttgattatacacttccttaatcaaaaaaatccctcatgttaaagtgttt 18894719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 89060 - 89154
Alignment:
Q  89 aaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 183  Q
    ||||||||||||||| ||||||||||  ||||| |||| ||  ||| |||||||| | |||| ||||||||| |||||| |||| ||||||||||    
T  89060 aaatgtatcgaaattgtaaaatagtccgtgattgtgaactttattagtcaaaataatctctcgtgttaaaatattttgtcaatattgtcatatca 89154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 2096366 - 2096272
Alignment:
Q  88 taaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatc 182  Q
    ||||||||| |||||| ||||||||||  ||||| || ||||| |||||||||||| | |||| |||| |||| ||||||||||| | |||||||    
T  2096366 taaatgtattgaaattctaaaatagtcaatgattgtgtatttcattaatcaaaatagtctctcgtgttgaaatattttgttaatattatcatatc 2096272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 48048104 - 48048014
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcata 180  Q
    ||||||||||||||  |||| |||| |||||| || ||||||||  |||||||| |  |||  ||||||||||||||||||||||||||||    
T  48048104 aatgtatcgaaattccaaaacagtccctgattgtgcatttcgtttgtcaaaatagtccctcgcgttaaaatgttttgttaatactgtcata 48048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 31198107 - 31198178
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    ||||||||||||||  |||||||||| |||||| |||||||| ||  |||||| |||| |||||||||||||    
T  31198107 tagtcataatagtcactaaatgtatcaaaatttcaaaatagtttccaattatgcattttgttaatcaaaata 31198178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 47944621 - 47944550
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    |||||| ||| |||| | ||||||| |||||||||||||||||| ||||| || | ||||||||||||||||    
T  47944621 tagtcacaattgtccttgaatgtattgaaattttaaaatagtctttgattgtgcacttcgttaatcaaaata 47944550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 22235228 - 22235330
Alignment:
Q  79 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtca 178  Q
    |||||||| | |||||||  |||||| ||||||||| |||||| |  | ||||||| |||||||| | ||||| ||||||||||| | |||||||| |||    
T  22235228 aatagtccttgaatgtattaaaatttcaaaatagtcgctgattgtacacttcgttagtcaaaatagtctctcacgttaaaatgttctattaatactatca 22235327  T
Q  179 tat 181  Q
    |||    
T  22235328 tat 22235330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 38989763 - 38989815
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatg 124  Q
    |||||| |||||||||| |||||||| ||||||||||||||||  ||||||||    
T  38989763 tagtcacaatagtccatcaatgtatcaaaattttaaaatagtccgtgattatg 38989815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 14984440 - 14984555
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 171  Q
    |||||| |||||||| | ||| ||||||||||| |||||| || |||||| || | ||||||| |||||||| |  || |  ||||||| ||| ||||||    
T  14984440 tagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttagtcaaaatagttcctgacattaaaatatttcgttaat 14984539  T
Q  172 actgtcatatcaatcc 187  Q
    | |||||||| |||||    
T  14984540 attgtcatattaatcc 14984555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 17573260 - 17573211
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    |||||||||||||| || ||||||||||||||| ||| | ||||||||||    
T  17573260 tagtcataatagtctatcaatgtatcgaaatttcaaattggtctctgatt 17573211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 40619262 - 40619213
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    |||||||| || ||| | |||||||| |||||||||||||||||||||||    
T  40619262 tagtcatattaatccctcaatgtatcaaaattttaaaatagtctctgatt 40619213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 47944335 - 47944388
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    |||||||||||||||||||||||||| ||||| || | || |||| ||||||||    
T  47944335 aatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaaata 47944388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 34703663 - 34703771
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 171  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||| ||| |  | |||||| ||||||||| | ||| |  ||||||| |||||| |||    
T  34703663 tagtcacaatagtccatcaatgtatc-aaattttaaaatagtctctaattgttcacttcgttgatcaaaatagtctctaactttaaaatattttgtcaat 34703761  T
Q  172 actgtcatat 181  Q
    | ||||||||    
T  34703762 attgtcatat 34703771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 23441491 - 23441558
Alignment:
Q  76 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    ||||||||||| | ||||||||||||||||||||||||   ||||| || | ||||||||||||||||    
T  23441491 cataatagtccttcaatgtatcgaaattttaaaatagttattgattgtgcacttcgttaatcaaaata 23441558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 10228750 - 10228832
Alignment:
Q  88 taaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaa 170  Q
    ||||||||||||||||| |||||||||| ||||| || | ||||||| |||||||| | | | |  |||||||||||||||||    
T  10228750 taaatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagtctttgaccttaaaatgttttgttaa 10228832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 24352396 - 24352481
Alignment:
Q  132 ttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatccgtataagtacttaattattgttatatcaatc 218  Q
    |||||||||||| |||||| |||||||||||| || ||||||||||||||||| || || |  |||||| ||| ||| |||||||||    
T  24352396 ttaatcaaaatagtatctcgtgttaaaatgttatg-taatactgtcatatcaaaccctaaacatacttacttactgtcatatcaatc 24352481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 38838754 - 38838647
Alignment:
Q  32 ggtaatgattattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcg 131  Q
    |||||| ||||||||||||  |||||||||||| |     |||||| |||| || || |||||||  ||||||||||||||||||||||| || |||| |    
T  38838754 ggtaataattattttggtccctgaatgtgtaacgag----tagtcacaatattctatcaatgtattaaaattttaaaatagtctctgattttgcattttg 38838659  T
Q  132 ttaatcaaaata 143  Q
    ||| ||||||||    
T  38838658 ttagtcaaaata 38838647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 23474545 - 23474629
Alignment:
Q  76 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaat 160  Q
    ||||||||||| | |||||||| |||||||||||||||   ||||| || | |||||||||||||||| | | | ||||||||||    
T  23474545 cataatagtccttcaatgtatcaaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagttttttatgttaaaat 23474629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 23457883 - 23457816
Alignment:
Q  76 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    ||||||||||| | ||||||||||||||||||||||||   ||||| || | || |||||||||||||    
T  23457883 cataatagtccttcaatgtatcgaaattttaaaatagttattgattgtgcactttgttaatcaaaata 23457816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 23532883 - 23532950
Alignment:
Q  76 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    ||||||||||| | || |||||||||||||||||||||   ||||| || | ||||||||||||||||    
T  23532883 cataatagtccttcaaggtatcgaaattttaaaatagttattgattgtggacttcgttaatcaaaata 23532950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 5358248 - 5358290
Alignment:
Q  79 aatagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    |||||||| | |||||||| |||||||||||||||||||||||    
T  5358248 aatagtccttcaatgtatcaaaattttaaaatagtctctgatt 5358290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 23533159 - 23533114
Alignment:
Q  98 gaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    ||||||||||||||||||||||||||| |||| |||| || |||||    
T  23533159 gaaattttaaaatagtctctgattatgcattttgttagtctaaata 23533114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 30990994 - 30991055
Alignment:
Q  125 aatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatc 186  Q
    ||||||||||||||| ||||||||| || |||||||||||  |||||| ||| ||| |||||    
T  30990994 aatttcgttaatcaagatattatctaatattaaaatgtttcattaatattgttatagcaatc 30991055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 23474819 - 23474783
Alignment:
Q  98 gaaattttaaaatagtctctgattatgaatttcgtta 134  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  23474819 gaaattttaaaatagtctctgattatgcattttgtta 23474783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 32996567 - 32996503
Alignment:
Q  79 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    |||||||| | |||| ||| ||||| ||||||||||||||||| || | || |||||||||||||    
T  32996567 aatagtccctcaatgcatcaaaattctaaaatagtctctgattgtgcactttgttaatcaaaata 32996503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 23159062 - 23159155
Alignment:
Q  71 ttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttt 164  Q
    ||||| |||||||||||| |||||||| ||||||||||||||| | ||||| || ||||||||| | |||||| |  || ||||| ||||||||    
T  23159062 ttagttataatagtccatcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtccctgatgttgaaatgttt 23159155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 3599847 - 3599938
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 181  Q
    ||||||| |||||||||||||||| | ||||| || |||| ||||||||||||  | ||||| |||||||| ||| || |||| ||||||||    
T  3599847 aatgtattgaaattttaaaatagtgtttgattgtgtattttgttaatcaaaatggtctctcacgttaaaatatttcgtaaatattgtcatat 3599938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 917231 - 917121
Alignment:
Q  71 ttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaa 170  Q
    ||||||| ||| |||| | |||||||||||||||||||||||||| ||||| |  | ||  || ||||||||| | |||||   |||||| |||||||||    
T  917231 ttagtcacaatcgtccctcaatgtatcgaaattttaaaatagtctttgattgtacactttatttatcaaaatagtctctcacaataaaatattttgttaa 917132  T
Q  171 tactgtcatat 181  Q
    || ||||||||    
T  917131 tattgtcatat 917121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 9607139 - 9607185
Alignment:
Q  75 tcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||    
T  9607139 tcataataatccatcaatgtatcaaaattttaaaatagtctctgatt 9607185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 22579575 - 22579505
Alignment:
Q  73 agtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    ||||| |||||||||| |||||||| ||||||||||||| || ||||||||  | || |||||||||||||    
T  22579575 agtcacaatagtccatcaatgtatcaaaattttaaaataatccctgattatacactttgttaatcaaaata 22579505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 26675045 - 26675147
Alignment:
Q  79 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtca 178  Q
    ||||||| || |||||||| ||||||||||||| ||||| |||||| |||| |||| |||||||| |   | |||||||||| |||  |||||| |||||    
T  26675045 aatagtctattaatgtatcaaaattttaaaataatctcttattatgtattttgttagtcaaaataattcataatgttaaaatatttcattaatattgtca 26675144  T
Q  179 tat 181  Q
    |||    
T  26675145 tat 26675147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 26946653 - 26946755
Alignment:
Q  79 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtca 178  Q
    ||||||| || |||||||| ||||||||||||| ||||| |||||| |||| |||| |||||||| |   | |||||||||| |||  |||||| |||||    
T  26946653 aatagtctattaatgtatcaaaattttaaaataatctcttattatgtattttgttagtcaaaataattcataatgttaaaatatttcattaatattgtca 26946752  T
Q  179 tat 181  Q
    |||    
T  26946753 tat 26946755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 7756407 - 7756512
Alignment:
Q  34 taatgattattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgtt 133  Q
    |||||||||||||||||||||||||||||| ||     |||||| ||| |||| | | |||||||||||| |||| ||||| || ||| |||| || |||    
T  7756407 taatgattattttggtctttgaatgtgtaagaa----gtagtcagaatggtccttgattgtatcgaaattataaattagtcccttattgtgaactttgtt 7756502  T
Q  134 aatcaaaata 143  Q
    | ||||||||    
T  7756503 agtcaaaata 7756512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 9607454 - 9607361
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 183  Q
    |||||||| ||||| ||||| |||| |||||| || ||||  |||||||||||| |  ||| ||||||||||||  |||| || ||||||||||    
T  9607454 aatgtatccaaattctaaaacagtcactgattgtgcattttcttaatcaaaataatccctcgtgttaaaatgttccgttagtattgtcatatca 9607361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 21600438 - 21600545
Alignment:
Q  74 gtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatac 173  Q
    |||| |||||||| | |||||||| ||||||||||||||||  ||||| || ||||||||||| ||| || |  || |||||||||| |||  ||||||     
T  21600438 gtcacaatagtcccttaatgtatcaaaattttaaaatagtcattgattgtgcatttcgttaataaaattagtcactgatgttaaaatatttcattaatat 21600537  T
Q  174 tgtcatat 181  Q
    ||||||||    
T  21600538 tgtcatat 21600545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 2986914 - 2987022
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 171  Q
    |||| |||||||||| | |||| ||| ||||||||||||||| | ||||  || |||| |||| |||||||| ||| | ||||||||||||||  |||||    
T  2986914 tagttataatagtcctttaatgcatcaaaattttaaaatagtttatgatg-tgcattttgttagtcaaaatagtatttaatgttaaaatgtttcattaat 2987012  T
Q  172 actgtcatat 181  Q
    ||| ||||||    
T  2987013 actatcatat 2987022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 21145699 - 21145619
Alignment:
Q  80 atagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaat 160  Q
    |||||| || || |||||||||||  ||||||||||| |||||||  |||||||| |||||||| | ||| ||||||||||    
T  21145699 atagtctatcaacgtatcgaaattccaaaatagtctcagattatgcgtttcgttagtcaaaatagtctctgatgttaaaat 21145619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 30841094 - 30841146
Alignment:
Q  131 gttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 183  Q
    ||||||||||||| ||||| |||||||||||||| ||||||  ||||||||||    
T  30841094 gttaatcaaaataatatctgatgttaaaatgtttcgttaatcttgtcatatca 30841146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 28929581 - 28929526
Alignment:
Q  88 taaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 143  Q
    ||||||||||||||||| | |||||| |||||||||| | ||||||| ||||||||    
T  28929581 taaatgtatcgaaatttcataatagtttctgattatgcacttcgttagtcaaaata 28929526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 41616693 - 41616828
Alignment:
Q  90 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatccgt 189  Q
    ||||||| |||||||||||||| ||| |  ||||| | ||||||| |||||||| | |   || |||||||||||| |||||| | |||| ||| ||| |    
T  41616693 aatgtattgaaattttaaaataatcttttgttatgcacttcgttagtcaaaatagtctacgatattaaaatgttttattaataatatcatttcagtcctt 41616792  T
Q  190 ataagtacttaattattgttatatcaatctctataa 225  Q
     ||  |||||| ||||||| |||||||||| |||||    
T  41616793 ttatatacttatttattgtcatatcaatctttataa 41616828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 44362699 - 44362617
Alignment:
Q  99 aaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 181  Q
    ||||||||||||||| ||||||| || | ||||||| |||||||| | | | |||||||||| |||  ||||||||| |||||    
T  44362699 aaattttaaaatagtttctgattgtgtaattcgttagtcaaaatagtctataatgttaaaatatttcattaatactgacatat 44362617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 7681073 - 7681012
Alignment:
Q  81 tagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaat 142  Q
    |||||| | |||||||| ||||||||||||||| | ||||| || ||||||||| |||||||    
T  7681073 tagtccctcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaat 7681012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 10708676 - 10708583
Alignment:
Q  79 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaata 172  Q
    |||||||||| |||||||  ||||||||||||||||| |||||||  |||  |||| |||||||| |  |  | |||||||| |||||||||||    
T  10708676 aatagtccattaatgtatataaattttaaaatagtctttgattatatattatgttagtcaaaataatcacctacgttaaaatattttgttaata 10708583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 21601941 - 21601990
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 121  Q
    |||||| |||||||||| |||||||| |||||  ||||||||||||||||    
T  21601941 tagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctgatt 21601990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 33508452 - 33508502
Alignment:
Q  72 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatg 124  Q
    ||||||||||||||||  |||||||| |||||  |||||||||||||||||||    
T  33508452 tagtcataatagtcca--aatgtatcaaaattccaaaatagtctctgattatg 33508502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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