View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_269 (Length: 242)
Name: NF8518A_low_269
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_269 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 33845557 - 33845326
Alignment:
| Q |
6 |
tatacaaaccccaagataacacaactcataaacataacaataagtatga-tctataatgcctttcacaggaaaggatcaacttgtatctcatgggtcaaa |
104 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
33845557 |
tatacaaaccctaagataacacaactgataaacataacaataagtatgaatctataatacctttcacaggaaaggatcaacttgtatctcatgagtcaaa |
33845458 |
T |
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| Q |
105 |
cgatgatagatccctcggacaaaattcttcattaggatcaagacacaacactcacttattaaagacgatactctacaacatgttgctcctcccatgcaaa |
204 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33845457 |
cgatgatagatccctcagacaaaattcttcattaggatcaagacaccgcactcacttattaaagacgatactctacaacatgttgctccacccatgcaaa |
33845358 |
T |
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| Q |
205 |
caaccgaatatgccaccagtccaccaccatgc |
236 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
33845357 |
caactgaatatgccaccagtccaccaccatgc |
33845326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 33948421 - 33948652
Alignment:
| Q |
6 |
tatacaaaccccaagataacacaactcataaacataacaataagtatga-tctataatgcctttcacaggaaaggatcaacttgtatctcatgggtcaaa |
104 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
33948421 |
tatacaaaccctaagataacacaactgataaacataacaataagtatgaatctataatacctttcacaggaaaggatcaacttgtatctcatgagtcaaa |
33948520 |
T |
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| Q |
105 |
cgatgatagatccctcggacaaaattcttcattaggatcaagacacaacactcacttattaaagacgatactctacaacatgttgctcctcccatgcaaa |
204 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33948521 |
cgatgatagatccctcagacaaaattcttcattaggatcaagacaccgcactcacttattaaagacgatactctacaacatgttgctccacccatgcaaa |
33948620 |
T |
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| Q |
205 |
caaccgaatatgccaccagtccaccaccatgc |
236 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
33948621 |
caactgaatatgccaccagtccaccaccatgc |
33948652 |
T |
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