View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_276 (Length: 241)
Name: NF8518A_low_276
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_276 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 33141517 - 33141295
Alignment:
| Q |
19 |
caaaatgcatgccacatacataatttacannnnnnngttgaagtatagttaaaaatctcaaatgtgaaaccttaagaacagataacttaaataacacttt |
118 |
Q |
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| T |
33141517 |
caaaatgcatgccacatacataatttacatttttttgttgaagtatagttaaaaatctcaaatgtgaaaccttaagaacagataactaaaataacacttt |
33141418 |
T |
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| Q |
119 |
attgatataacaatgtaatgcaaagttgataaatagccttattctagttgcatttgtgatctcactgtgatcaacggtaatgcaagactcgtggctacat |
218 |
Q |
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| T |
33141417 |
attgatataacagtgtaatacaatggtgacaaatagccttattctagttgcatttgtgatctcactgtgatcaacgataatgcaagactcatggctacat |
33141318 |
T |
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| Q |
219 |
tccttaagggtacataaaactga |
241 |
Q |
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| T |
33141317 |
tgcttaaggatacataaaactga |
33141295 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 33286769 - 33286857
Alignment:
| Q |
149 |
aaatagccttattctagttgcatttgtgatctcactgtgatcaacggtaatgcaagactcgtggctacattccttaa-gggtacataaa |
236 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||| ||||||| ||||| ||||||||| || ||| ||||||||||| |
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| T |
33286769 |
aaatagccttattctagttgcattcatgatcttactgtgatcaacaataatgcaggactcatggctacatcccataaggggtacataaa |
33286857 |
T |
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