View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_280 (Length: 239)
Name: NF8518A_low_280
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_280 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 4283536 - 4283757
Alignment:
| Q |
18 |
gacatcaaaaataacctgactagataatccaacaacttcctcaacgtcttaagatcagaaacaagctgcttagtcttcttccccaaagtatgccaaattg |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4283536 |
gacaacaaaaataacctgactagataatccaacaacttcctcaacgtcttaagatcagaaacaagctgcttagtcttcttccccaaagtatgccaaattg |
4283635 |
T |
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| Q |
118 |
gatccaactgtctcctcacaatctcatcaaacgacttaaacaacccattctccactgtcaaatcctccacatcaaccttattcgtcttcctcatctcttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4283636 |
gatccaactgtctcctcacaatctcatcaaacgacttaaacaacccattctccacagtcaaatcctccacatcaaccttattcgtcttcctcatctcttt |
4283735 |
T |
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| Q |
218 |
caaacacgcatccataacctcg |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
4283736 |
caaacacgcatccataacctcg |
4283757 |
T |
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