View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_282 (Length: 238)

Name: NF8518A_low_282
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_282
NF8518A_low_282
[»] chr4 (5 HSPs)
chr4 (1-227)||(24666621-24666847)
chr4 (1-227)||(34941555-34941782)
chr4 (1-227)||(18363426-18363648)
chr4 (1-227)||(36599280-36599502)
chr4 (105-180)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (108-227)||(26240615-26240735)
chr1 (1-88)||(26240779-26240866)
[»] chr3 (2 HSPs)
chr3 (1-180)||(53242719-53242900)
chr3 (52-203)||(43479315-43479456)
[»] chr2 (2 HSPs)
chr2 (1-167)||(19697410-19697568)
chr2 (1-58)||(13265594-13265651)
[»] chr8 (1 HSPs)
chr8 (13-117)||(32566462-32566563)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 24666847 - 24666621
Alignment:
Q  1 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttctt 100  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  24666847 aaaataccgtttgattgaatcaatggttgagatttattgaaaataagattgagaacatctagacattttaacatacaatcttgtccctattatatttctt 24666748  T
Q  101 catccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgaca 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24666747 catctttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgaca 24666648  T
Q  201 ggaaccaatttcttggtgttgataact 227  Q
    |||||||||||||||||||||||||||    
T  24666647 ggaaccaatttcttggtgttgataact 24666621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34941555 - 34941782
Alignment:
Q  1 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttctt 100  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||| |||||||||| |||||||||||||||  |||||||||||| |||||| ||||    
T  34941555 aaaataccgtttgattgaatcaacggttgagatttattgaaaataaagttgagaacatctagacattttaacatacaatcttgtccctgttatatctctt 34941654  T
Q  101 catccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgaca 200  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34941655 catcctcttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaaatgaca 34941754  T
Q  201 ggaa-ccaatttcttggtgttgataact 227  Q
    |||| |||||||||||||||||||||||    
T  34941755 ggaacccaatttcttggtgttgataact 34941782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 18363648 - 18363426
Alignment:
Q  1 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttctt 100  Q
    |||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | ||||||||||||||||||||||    
T  18363648 aaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatatttctt 18363549  T
Q  101 catccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgaca 200  Q
    |||||||  ||||||| ||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18363548 catcctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgaca 18363453  T
Q  201 ggaaccaatttcttggtgttgataact 227  Q
     ||||||||||||||||||||||||||    
T  18363452 tgaaccaatttcttggtgttgataact 18363426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36599280 - 36599502
Alignment:
Q  1 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttctt 100  Q
    |||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | ||||||||||||||||||||||    
T  36599280 aaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatatttctt 36599379  T
Q  101 catccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgaca 200  Q
    |||||||  ||||||| ||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36599380 catcctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgaca 36599475  T
Q  201 ggaaccaatttcttggtgttgataact 227  Q
     ||||||||||||||||||||||||||    
T  36599476 tgaaccaatttcttggtgttgataact 36599502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 8752390 - 8752465
Alignment:
Q  105 cttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa 180  Q
    ||||||||||||||||||||  || |||| | | | ||||||| ||||||||||||||| ||| ||||||||||||    
T  8752390 cttttcaactcctctgaaattagtgaatccataggttgcttgctgaaaacatctacatcaattcgaaaatgaaaaa 8752465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 26240735 - 26240615
Alignment:
Q  108 ttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacaggaa-cc 206  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  26240735 ttcaactcccttgaaatatgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagaaaccc 26240636  T
Q  207 aatttcttggtgttgataact 227  Q
    |||||||||||||||||||||    
T  26240635 aatttcttggtgttgataact 26240615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 26240866 - 26240779
Alignment:
Q  1 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccct 88  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  ||||||||||||    
T  26240866 aaaataccgtttgattgaatcaatggttgagatttattgaaaataatattgagaacatctagacattttaacatacaatcttgtccct 26240779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 53242719 - 53242900
Alignment:
Q  1 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaatt-gagaacatatagacattttaacattaaatcttgt-ccctattatatttc 98  Q
    |||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| || |  ||| |||| |||||||||||||     
T  53242719 aaaataccatttgattgaatcaatggttaagatttattgaaaataaaatttgagaacatctagacattttcacttacaattttgttccctattatatttg 53242818  T
Q  99 ttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa 180  Q
    |||||||| ||||||||   | ||||||||||||||| ||||| | ||||||||||||||| ||||||| | ||||||||||    
T  53242819 ttcatcctcttcaactctcttaaaatctgtaaatctaaaagatacatgcagaaaacatctatatccattcggaaatgaaaaa 53242900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 43479456 - 43479315
Alignment:
Q  52 agaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaa 151  Q
    ||||||| |||||||||| ||||  ||| |||| ||||||||||||||||||| | |||||||| |           |||||||||||||||||||||||    
T  43479456 agaacatctagacattttcacatacaatattgttcctattatatttcttcatcttattcaactctt-----------aaatctagaagatgcttgcagaa 43479368  T
Q  152 aacatctacatccatttg-aaaatgaaaaaccagatatgggaaagtgacagga 203  Q
    |||||||||||||||| | ||||||||||| |||| | || ||||||| ||||    
T  43479367 aacatctacatccattcgaaaaatgaaaaaacagagacggaaaagtgatagga 43479315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 19697410 - 19697568
Alignment:
Q  1 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttctt 100  Q
    ||||||| ||||||||||||||||| || |||||| || |||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  19697410 aaaatactgtttgattgaatcaatgtttgagattttttgaaaa-aaaattgagaacatctagacattttaacatacaatcttgtccctattatatttctt 19697508  T
Q  101 catccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatt 167  Q
    |||| ||||||||||| || |       |||| |||||||||||||| |||||||||||||||||||    
T  19697509 catcattttcaactccactaa-------aaatttagaagatgcttgcggaaaacatctacatccatt 19697568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13265594 - 13265651
Alignment:
Q  1 aaaataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacat 58  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||||||    
T  13265594 aaaataccgttggattaaatcaatggtttagaattattaaaaataaaaatgagaacat 13265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 32566563 - 32566462
Alignment:
Q  13 gattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaa 112  Q
    |||||| ||||||||  ||||||||| ||||  ||||||||||||| || ||||||| ||||  |||||||||||||||||||||| ||||| | |||||    
T  32566563 gattgattcaatggtcaagatttattgaaaa--aaattgagaacatctaaacattttcacatacaatcttgtccctattatatttc-tcatcttattcaa 32566467  T
Q  113 ctcct 117  Q
    |||||    
T  32566466 ctcct 32566462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University