View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_288 (Length: 237)
Name: NF8518A_low_288
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_288 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 40805882 - 40806076
Alignment:
| Q |
18 |
aatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcactttttggagagaa |
117 |
Q |
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| T |
40805882 |
aatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcactttttggagagaa |
40805981 |
T |
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| Q |
118 |
tttagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccgaatacaaaagagtgacgaagttcaaaccccc |
212 |
Q |
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| T |
40805982 |
ttcagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccaaataaaaaagagtgacgaagttcaaaccccc |
40806076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 8761 - 8566
Alignment:
| Q |
18 |
aatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcacttttt-ggagaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8761 |
aatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcacttttttggagaga |
8662 |
T |
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| Q |
117 |
atttagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccgaatacaaaagagtgacgaagttcaaaccccc |
212 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
8661 |
attcagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccaaataaaaaagagtgacgaagttcaaaccccc |
8566 |
T |
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