View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_292 (Length: 236)

Name: NF8518A_low_292
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_292
NF8518A_low_292
[»] chr6 (3 HSPs)
chr6 (124-212)||(31609388-31609476)
chr6 (50-125)||(31609571-31609646)
chr6 (125-173)||(5957431-5957478)
[»] chr7 (3 HSPs)
chr7 (125-212)||(34115168-34115254)
chr7 (67-129)||(34115347-34115409)
chr7 (60-129)||(42678067-42678136)
[»] chr3 (1 HSPs)
chr3 (125-200)||(45215108-45215183)
[»] chr1 (2 HSPs)
chr1 (125-200)||(51826543-51826618)
chr1 (67-129)||(19893588-19893650)
[»] chr5 (1 HSPs)
chr5 (59-129)||(36682035-36682105)
[»] scaffold0472 (1 HSPs)
scaffold0472 (60-129)||(1759-1828)
[»] chr4 (1 HSPs)
chr4 (62-129)||(44646855-44646922)
[»] chr2 (1 HSPs)
chr2 (125-200)||(18176176-18176251)
[»] chr8 (1 HSPs)
chr8 (59-109)||(39039014-39039064)


Alignment Details
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 31609476 - 31609388
Alignment:
Q  124 taaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctcagcttattattc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||  ||||||||||    
T  31609476 taaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtttcatacccccacaatcatagcctctacttattattc 31609388  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 31609646 - 31609571
Alignment:
Q  50 aatttattcaggcaactaaatctcattgtattcaataaagatttgtaccaacttataaaatatttatcggtattta 125  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| | ||| ||||||||    
T  31609646 aatttattcaggcaactaaatctcatggtatttaatcaagatttgtaccaacttataaaatgtctatgggtattta 31609571  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 5957431 - 5957478
Alignment:
Q  125 aaaaaaccttgagactttttgagacatccataacttttgttttgtcttt 173  Q
    |||||||||||||||||||||||||||| || | ||||||||| |||||    
T  5957431 aaaaaaccttgagactttttgagacatctat-atttttgttttttcttt 5957478  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 34115254 - 34115168
Alignment:
Q  125 aaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctcagcttattattc 212  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||  ||||||||||    
T  34115254 aaaaaaccttaaaactttttgagacatccataacttttgatttgtctttgtctcatac-cccagaatcatagcctctacttattattc 34115168  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 34115409 - 34115347
Alignment:
Q  67 aaatctcattgtattcaataaagatttgtaccaacttataaaatatttatcggtatttaaaaa 129  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| ||||| |||||| |||||    
T  34115409 aaatctcatggtattcaatcaagatttgtaccaacttataaaatgtttataggtattcaaaaa 34115347  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 42678136 - 42678067
Alignment:
Q  60 ggcaactaaatctcattgtattcaataaagatttgtaccaacttataaaatatttatcggtatttaaaaa 129  Q
    |||||| ||||  ||| ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||    
T  42678136 ggcaaccaaattccatggtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaa 42678067  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 45215183 - 45215108
Alignment:
Q  125 aaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctc 200  Q
    ||||||||||||||||||||||||||| || |||||||||||  || ||||||| ||| |||||| ||||||||||    
T  45215183 aaaaaaccttgagactttttgagacattcacaacttttgtttcatccttgtctcttaccctcacagtcatagcctc 45215108  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 51826618 - 51826543
Alignment:
Q  125 aaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctc 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||  || ||||||| | | |||| | ||||||||||    
T  51826618 aaaaaaccttgagactttttgagacattcataacttttgtttcatccttgtctcttgccctcagagtcatagcctc 51826543  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 19893588 - 19893650
Alignment:
Q  67 aaatctcattgtattcaataaagatttgtaccaacttataaaatatttatcggtatttaaaaa 129  Q
    |||||||||  |||||||| |||||||||||||||||||||||| | ||| ||||||||||||    
T  19893588 aaatctcatgatattcaattaagatttgtaccaacttataaaatgtctattggtatttaaaaa 19893650  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 36682035 - 36682105
Alignment:
Q  59 aggcaactaaatctcattgtattcaataaagatttgtaccaacttataaaatatttatcggtatttaaaaa 129  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||| |||||||| | ||| |||||| |||||    
T  36682035 aggcaaccaaatctcatggtattcaatcaagatttgtaccaacctataaaatgtctataggtattcaaaaa 36682105  T

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Target: scaffold0472 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 1828 - 1759
Alignment:
Q  60 ggcaactaaatctcattgtattcaataaagatttgtaccaacttataaaatatttatcggtatttaaaaa 129  Q
    |||||| ||||| ||| ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||    
T  1828 ggcaaccaaatcccatggtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaa 1759  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 44646855 - 44646922
Alignment:
Q  62 caactaaatctcattgtattcaataaagatttgtaccaacttataaaatatttatcggtatttaaaaa 129  Q
    |||| ||||| ||| ||||||||| ||||||||||||||||| |||||| | ||| |||||| |||||    
T  44646855 caaccaaatcccatagtattcaattaagatttgtaccaacttttaaaatgtctattggtattcaaaaa 44646922  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 18176251 - 18176176
Alignment:
Q  125 aaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctc 200  Q
    ||||||||||||||||||||||||||| || |||||| ||||  || ||||||| ||| || | | ||||||||||    
T  18176251 aaaaaaccttgagactttttgagacattcacaactttcgtttcatccttgtctcttacccttagagtcatagcctc 18176176  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 39039064 - 39039014
Alignment:
Q  59 aggcaactaaatctcattgtattcaataaagatttgtaccaacttataaaa 109  Q
    ||||||| ||||||| | ||||||||| |||||| ||||||||||||||||    
T  39039064 aggcaaccaaatctcttggtattcaattaagattcgtaccaacttataaaa 39039014  T

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