View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_295 (Length: 235)
Name: NF8518A_low_295
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_295 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 9329442 - 9329245
Alignment:
| Q |
23 |
cttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaaccaaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329442 |
cttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaaccaaa |
9329343 |
T |
|
| Q |
123 |
tccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctcattgc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9329342 |
tccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatgggtcttatcggttcatgcaacggcctcattgc |
9329245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 9283487 - 9283669
Alignment:
| Q |
30 |
aaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaaccaaatccatga |
129 |
Q |
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|||||||||||||||| | |||||||| ||||| |||||||| | | ||| ||| ||||||||||||||||| | ||||| |||||||||||||| | |
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| T |
9283487 |
aaccttcacctcaaaagt---tccctcaacttcaaactcatcctccgtcacaagaccaatctctaccaactcgatttccctaacctaaccaaatccataa |
9283583 |
T |
|
| Q |
130 |
ttccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctc |
215 |
Q |
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| || |||||||||||||||| ||||||||| | |||| |||||| |||||||| || ||||||||| |||||||| ||||||||| |
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| T |
9283584 |
taccgctcaaccatcctttcaccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctc |
9283669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 9275344 - 9275167
Alignment:
| Q |
48 |
aattccctcaatttcaacctcatccttcagctcaataccgat-ctctaccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcct |
146 |
Q |
| |
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||||||||||||||||||||||| ||||| | ||| ||| | |||||| ||||| || | ||||| |||||||||| ||| || | ||||||||||||| |
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| T |
9275344 |
aattccctcaatttcaacctcattcttcaacacaacacccaaactctacgaactcaatttccctaacctaaccaaattcataatacaactcaaccatcct |
9275245 |
T |
|
| Q |
147 |
ttcagcaccaa----cattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctcattgc |
220 |
Q |
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||||| | ||| || || | || ||||||||||||||| |||||||||||| |||||||| |||||||||||||| |
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| T |
9275244 |
ttcagtagcaagcaacaatgattctttcacgcgtaacagcaccatggctcttataggttcatgtaacggcctcattgc |
9275167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 9316861 - 9316680
Alignment:
| Q |
30 |
aaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatctt---cctaatctaaccaaatcca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| ||| |||| ||||||||| ||||| | ||| | ||||| ||||||| |
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| T |
9316861 |
aaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaactctaccaaatcgatgatttccctgacctaacgaaatcca |
9316762 |
T |
|
| Q |
127 |
tgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcct |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||||| |||||||||| |||||||| |
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| T |
9316761 |
tgattccactcaaccatccttt------caacacagctcctgtcacgtataacagcataatggctcttctcggttcatgtaacggcct |
9316680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 9321722 - 9321627
Alignment:
| Q |
126 |
atgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaa------cagcaacatggctcttatcggttcatgcaacggcctc |
215 |
Q |
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||||||||||||||||||||||||| |||||| || |||||||||| ||||| ||| | |||||||||||||||||| || ||||||||| |
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| T |
9321722 |
atgattccactcaaccatcctttcaccaccaaaatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctc |
9321627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 10348585 - 10348509
Alignment:
| Q |
84 |
accgatctctaccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcctttcagcaccaacat |
160 |
Q |
| |
|
|||||| ||||||||||| || | ||||| ||||||||||| || |||||||||||| |||| |||| |||||||| |
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| T |
10348585 |
accgatttctaccaactccatttccctaacctaaccaaatctatcattccactcaactatcccttcactaccaacat |
10348509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 9060404 - 9060440
Alignment:
| Q |
23 |
cttcactaaccttcacctcaaaaataattccctcaat |
59 |
Q |
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||||||||||||| |||||||||||||| |||||||| |
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| T |
9060404 |
cttcactaacctttacctcaaaaataatcccctcaat |
9060440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 37463191 - 37463149
Alignment:
| Q |
173 |
gcgtaacagcaacatggctcttatcggttcatgcaacggcctc |
215 |
Q |
| |
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|||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
37463191 |
gcgtgacagcaccatggctcttatcggttcatgtaacggcctc |
37463149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 562013 - 561966
Alignment:
| Q |
23 |
cttcactaaccttcacctcaaaaataattccctcaatttcaacctcatcct |
73 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
562013 |
cttcactaaccttcacctcaaa---aactccctcaattttaacctcatcct |
561966 |
T |
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