View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_298 (Length: 234)
Name: NF8518A_low_298
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_298 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3686197 - 3685964
Alignment:
| Q |
1 |
agtaaccactttcttttttcttttctccctaacataactgtcatattttatttctagtactgctagttatcaagaacacacctcataacgatctgcccga |
100 |
Q |
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| T |
3686197 |
agtaaccactttcttttttcttttctccctaacataactgtcatattttttttctagtactgctatttatcaagaacacacctcataacgatcttcccga |
3686098 |
T |
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| Q |
101 |
atcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataagaaccaatcacttactgc |
200 |
Q |
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| T |
3686097 |
atcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttaaaagaaccaatcacttactgc |
3685998 |
T |
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| Q |
201 |
cacatcagttcgcgatgcgttcgtgatctatatt |
234 |
Q |
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| T |
3685997 |
cacatcagttcgcgatgcgttcgtgatctatatt |
3685964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 3693925 - 3693730
Alignment:
| Q |
40 |
gtcatattttatttctagtactgctagttatcaagaacacacctcataacgatctgcccgaatcgatacgtgtggtaattataaaggaagaagttgtgta |
139 |
Q |
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| T |
3693925 |
gtcatattttatttctagtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatacgtgttgtaattataaaggaagaagcagtgta |
3693826 |
T |
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| Q |
140 |
tagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatatt |
234 |
Q |
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| T |
3693825 |
tggttcaggaatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaatatt |
3693730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 3679409 - 3679213
Alignment:
| Q |
33 |
cataactgtcatatttt-atttctagtactgctagttatcaagaacacacctcataacgatctgcccgaatcgatac---gt----gtggtaattataaa |
124 |
Q |
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| T |
3679409 |
cataactgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaa |
3679310 |
T |
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| Q |
125 |
ggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
221 |
Q |
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| T |
3679309 |
g-aagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtt |
3679213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 3675716 - 3675595
Alignment:
| Q |
45 |
attttatttctagtactgctagttatcaagaacacacctcataacgatctgcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagtt |
144 |
Q |
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||||||||||||||||| ||| |||||||||||||| |||| | ||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
3675716 |
attttatttctagtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattcgtgttgtaattataaaggaagaagcagtgtatagtt |
3675617 |
T |
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| Q |
145 |
catgaatgagcggaaatcacag |
166 |
Q |
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| T |
3675616 |
ctggaatgagcggaaatgacag |
3675595 |
T |
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