View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_30 (Length: 431)
Name: NF8518A_low_30
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 6917535 - 6917921
Alignment:
| Q |
17 |
catcaagattgagcgcggcgaggttgattccgaaacatataggttctgattttccttttgcttgttgtttgagcacactcaatataaaatgctaaatgca |
116 |
Q |
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| T |
6917535 |
catcaagattgagcgcggcgaggttgatttcgaaacatataggttctgattttccatttgcttgttgtttgagcacactcaatataaaatgctaaatgca |
6917634 |
T |
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| Q |
117 |
cagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatttgatga |
216 |
Q |
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| T |
6917635 |
cagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatttgatga |
6917734 |
T |
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| Q |
217 |
ctgttcttggcacacatgcatgctgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaaagtcaa |
316 |
Q |
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| T |
6917735 |
ctgttcttggcacatatgcatgatgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaaagtcaa |
6917834 |
T |
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| Q |
317 |
atggcttatgtcatgagaacaacaaggttacatggtcgtttccaagatcaatggtaaaggttaaaaacttgaagtaatggtaatttg |
403 |
Q |
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| T |
6917835 |
atggcttatgtcatgagaacaacaaggttacatggtcatttccaagatcaacggtaaaggttaaaaacttgaagtaatggtaatttg |
6917921 |
T |
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