View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_300 (Length: 233)
Name: NF8518A_low_300
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_300 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33186929 - 33186702
Alignment:
| Q |
1 |
agacatggaagaaaacaattaaaactaaaattaaataagaaaaatgatggcagagaaaagtattgtgggttcgtgtgctagaaaaatacatagagcaccc |
100 |
Q |
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| T |
33186929 |
agacatggaagaaaacaattaaaactaaaattaaataagaaaaatgatggcagagaaaagtattgtgggttcgtgtgctagaaaaatacatagagcaccc |
33186830 |
T |
|
| Q |
101 |
gacaaagatatggtattaaggccaaaataaagccattcttttctttttgtaggttctagctaccttccttgataattgatatatgaatggagaaaactat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33186829 |
gacaaagatatggtattaaggccaaaataaagccattcttttctttttgtaggttctagctaccttccttgataattgatatatgaatggagaaaactat |
33186730 |
T |
|
| Q |
201 |
attctataaattgttcccatggtctctg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33186729 |
attctataaattgttcccatggtctctg |
33186702 |
T |
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