View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_302 (Length: 233)
Name: NF8518A_low_302
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_302 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 45123575 - 45123343
Alignment:
| Q |
1 |
gaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaatagacattcatagaaggatacatttgagaaacatttttc |
100 |
Q |
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| T |
45123575 |
gaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaatagacattcatagaaggatatatttgagaaacatttttc |
45123476 |
T |
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| Q |
101 |
atagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtggaaacttcaaaaagcggagacgaaact |
200 |
Q |
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| T |
45123475 |
atagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtagaaacttcaaaaagcggagacgaaact |
45123376 |
T |
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| Q |
201 |
atgatcattgtccaataacaactagaaaataat |
233 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
45123375 |
atgatcattgtccaatgacaactagaaaataat |
45123343 |
T |
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