View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_303 (Length: 232)
Name: NF8518A_low_303
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_303 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 35489857 - 35489626
Alignment:
| Q |
1 |
tgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaa |
100 |
Q |
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| T |
35489857 |
tgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgctgggatggttagttcccagtgaaatatgctctcttgaa |
35489758 |
T |
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| Q |
101 |
gtccgatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttg |
200 |
Q |
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| T |
35489757 |
gtccgatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttg |
35489658 |
T |
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| Q |
201 |
gacttttcttcttctttgctggctttgtgctc |
232 |
Q |
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| T |
35489657 |
gacttttcttcttctttgctggctttgtgctc |
35489626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 18233999 - 18233837
Alignment:
| Q |
40 |
atttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaac |
139 |
Q |
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| T |
18233999 |
atttgcatggtcttggggtcctctaggttggttggtgccaagtgaaatattcccactcgaagttcgttctgcggctcaaagtatcaatgtctctgttaac |
18233900 |
T |
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| Q |
140 |
atgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttgga |
202 |
Q |
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| T |
18233899 |
atgatttgcacctttatcattgctcaaattttcactacaatgctttgtcacatgaagtttgga |
18233837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 14233090 - 14233314
Alignment:
| Q |
5 |
cttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtcc |
104 |
Q |
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| T |
14233090 |
cttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaaatatgcgctctagaggttc |
14233189 |
T |
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| Q |
105 |
gatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggact |
204 |
Q |
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| T |
14233190 |
gaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttgaagtttggcct |
14233289 |
T |
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| Q |
205 |
tttcttcttctttgctggctttgtg |
229 |
Q |
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| T |
14233290 |
tttctttttctttgctggttttgtg |
14233314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 14242764 - 14242988
Alignment:
| Q |
5 |
cttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtcc |
104 |
Q |
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| T |
14242764 |
cttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaagtatgcgctctagaggttc |
14242863 |
T |
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| Q |
105 |
gatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggact |
204 |
Q |
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|| | ||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |
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| T |
14242864 |
gaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttgaagtttggcct |
14242963 |
T |
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| Q |
205 |
tttcttcttctttgctggctttgtg |
229 |
Q |
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| T |
14242964 |
tttctttttctttgctggttttgtg |
14242988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 51580524 - 51580714
Alignment:
| Q |
5 |
cttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtcc |
104 |
Q |
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| T |
51580524 |
cttcttttattctttataagtgcatatgttgcggcatttgctgggtcttggggcccgctaggttggtcgga-ccaagtgaaatttgttctcttgaggttt |
51580622 |
T |
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| Q |
105 |
gatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaag |
196 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||| ||||| ||| | ||||||||||||| || | ||||||||||||||||||| |
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| T |
51580623 |
gatctgcaggtcaagctatcaatgttgccgtgaacatgttattcacatttgttgttgctcaagttttcctcaacatgctttgtcacttgaag |
51580714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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