View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_31 (Length: 430)
Name: NF8518A_low_31
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 2 - 426
Target Start/End: Original strand, 6757748 - 6758173
Alignment:
| Q |
2 |
tgaacaaatattgtctgagtgatttaaatcttgnnnnnnnncttccataaataaaa-aatagttgcatttataatttaaatgtccctagagctatgcaag |
100 |
Q |
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| T |
6757748 |
tgaacaaatattgtctgagtgatttaaatcttgttttttttcttccataaataaaaaaatagttgcatttataatttaaatgtccctagagctatgcaag |
6757847 |
T |
|
| Q |
101 |
tataatgcagtagattgtcttaggatttggacacatactttagttgttgccttttacaatatgtctgatcatagttctttggaacactaatatttgctct |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6757848 |
tataatgcagtaaattgtcttaggatttggacacatactttagttgttgccttttaaaatatgtctgatcatagttctttggaacactaatatttgctct |
6757947 |
T |
|
| Q |
201 |
gaactgctaatatcaggaagctattttttgtaatgccatgatttcttatgtttactaatttggtttgcactgccttccgtgctgtaggtggaagagaaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |
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| T |
6757948 |
gaactgctaatatcaggaagctattttttgtaatgtcatgatttcttatgtttactaatttggtttgtactgccttccatgctgtaggtggaagagaagg |
6758047 |
T |
|
| Q |
301 |
gattaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagacttaaacaagaaggcagtgcttt |
400 |
Q |
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| T |
6758048 |
gattaacttccgagacagcggacagaattggaacttttactaatgaaaaaggacactctttaacattattacgtagacttaaacaagaaggcagtgcttt |
6758147 |
T |
|
| Q |
401 |
cttagaaaatgctggatctgttgatg |
426 |
Q |
| |
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| T |
6758148 |
cttagaaaatgctggatctgttgatg |
6758173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 197 - 426
Target Start/End: Complemental strand, 25465110 - 25464881
Alignment:
| Q |
197 |
ctctgaactgctaatatcaggaagctattttttgtaatgccatgatttcttatgtttactaatttggtttgcactgccttccgtgctgtaggtggaagag |
296 |
Q |
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|||| ||||| |||||| ||||| ||| ||||| || || ||||||||||| |||| |||| |||||| |||| ||| | ||||||||||||||||| |
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| T |
25465110 |
ctctaaactgttaatatttggaagttatattttgcaacaccgtgatttcttatctttaataatgtggtttttactgactttcatgctgtaggtggaagag |
25465011 |
T |
|
| Q |
297 |
aaaggattaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagacttaaacaagaaggcagtg |
396 |
Q |
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| T |
25465010 |
aaaggattaactgctgagacagctgacagaattggaacttttgttaaagagaaaggacatcctttaacattgttatcgaaacttaaacaagaaggcagtg |
25464911 |
T |
|
| Q |
397 |
ctttcttagaaaatgctggatctgttgatg |
426 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
25464910 |
ctttcttagaaaatgctggatctgttgatg |
25464881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 280 - 426
Target Start/End: Complemental strand, 25475761 - 25475614
Alignment:
| Q |
280 |
tgctgtaggtggaagagaaaggattaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagact |
379 |
Q |
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|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| || |||||||| |||||||| || ||| | || |
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| T |
25475761 |
tgctgtaggtggaagagaaaggattaactgttgagacagctgacagaattggaacttttgttagagagaaaggacatcctttaacgttgttagagaagct |
25475662 |
T |
|
| Q |
380 |
taaacaagaaggcagtgctttcttag-aaaatgctggatctgttgatg |
426 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
25475661 |
taaacaagaaggcagtgctttcttagaaaaatgctggatctgttgatg |
25475614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 202 - 426
Target Start/End: Complemental strand, 40087507 - 40087292
Alignment:
| Q |
202 |
aactgctaatatcaggaagctattttttgtaatgccatgatttcttatgtttactaatttggtttgcactgccttccgtgctgtaggtggaagagaaagg |
301 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||| ||| || ||||||||||||||||||| |
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| T |
40087507 |
aactgttaaaatcaggaagctattttttgtaatgccatgattt----tgt-----aatgtggtttgtactgacttttatgttgtaggtggaagagaaagg |
40087417 |
T |
|
| Q |
302 |
attaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagacttaaacaagaaggcagtgctttc |
401 |
Q |
| |
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||||| | |||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||| ||||| | ||| |||||||| ||||| ||||| |
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| T |
40087416 |
attaagtgccgagacagctgacagaatcggaacttttgttaaagaaaaaggacaccctttaacagtattatcaaaactgaaacaagatagcagtcctttc |
40087317 |
T |
|
| Q |
402 |
ttagaaaatgctggatctgttgatg |
426 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
40087316 |
ttagaaaatgctggatctgttgatg |
40087292 |
T |
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