View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_311 (Length: 230)
Name: NF8518A_low_311
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_311 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37667797 - 37668016
Alignment:
| Q |
1 |
ttgaaaccattacatagttccttcattaaaccttcaccacctagcttattcgcgatcaccggtaacaaatcctcaaagtcaattcctttgccaatttcag |
100 |
Q |
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| T |
37667797 |
ttgaaaccattacatagttccttcattaaaccttcaccacctagcttattcgcgatcaccggtaacaaatcctcaaagtcaattcctttgccaatttcag |
37667896 |
T |
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| Q |
101 |
ccatcctttaatatcaatacaaaaatttgttgaagaaatatgaatatatatgaatgtatgtaatgtgagttttttctttgatgaaggtgatgaatgaata |
200 |
Q |
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| T |
37667897 |
ccatcctttaatatcaatacaaaaatttgttgaagaa----------atatgaatgtatgtaatgtgagttttttctttgatgaaggtgatgaatgaata |
37667986 |
T |
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| Q |
201 |
ttgaactgtttatatagatatatatgatga |
230 |
Q |
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| T |
37667987 |
ttgaactgtttatatagatatataagatga |
37668016 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 21941508 - 21941438
Alignment:
| Q |
7 |
ccattacatagttccttcattaaaccttcaccacctagcttattcgcgatcaccggtaacaaatcctcaaa |
77 |
Q |
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| T |
21941508 |
ccattgcatagctcctttattaaaccttcaccacctagcttgtttgccatcactggtaacaagtcttcaaa |
21941438 |
T |
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